Fig. 4
A summary of dN/dS rates for NarJ subfamily nucleotide sequences from Bacterial and Archaeal phyla. Each panel summarizes intra-phylum species dN/dS values for each NarJ subfamily member nucleotide codon alignment. Each boxplot indicates the maximum (top error bar), 75th percentile, median (50th percentile), 25th percentile and minimum (bottom error bar) dN/dS value (y-axis). Phylum listed on the x-axis of each panel are abbreviated as follows: Alphaproteobacteria (α), Betaproteobacteria (b), Gammaproteobacteria (γ), and Deltaproteobacteria (δ), Epsilonproteobacteria (ε),Chlorobia (Ch), Actinobacteria (At), Bacilli (Ba), Clostridia (Cl), Euryarchaea (eA), and Crenarchaea (cA). Panel a shows dN/dS values for narJ codon aligned nucleotide sequences. Panel b provides dN/dS values for dmsD codon aligned nucleotide sequences. Panel c shows dN/dS values for all torD sequences (black), as well as dN/dS values from codon subalignments of torD fdh (dark grey) and torD torAC (light grey) subgroups. Panel d shows ycdY dN/dS values