Table 1 Species, genes and GenBank accession numbers used in the phylogenetic analysis
From: Unexpected co-linearity of Hox gene expression in an aculiferan mollusk
Species name/Abbreviation | Phylum | Gene Name | Accession Number |
|---|---|---|---|
Acanthochitona crinita/Acr | Mollusca | Acr_Hox1 | KR190463 |
Acr_Hox2 | KR190464 | ||
Acr_Hox3 | KR190465 | ||
Acr_Hox4 | KR190466 | ||
Acr_Hox5 | KR190467 | ||
Acr_Hox7 | KR190468 | ||
Acr_Post2 | KR190469 | ||
Branchiostoma floridae/Bfl | Chordata | Bfl_Hox1 | BAA78620 |
Bfl_Hox2 | BAA78621 | ||
Bfl_Hox4 | BAA78622 | ||
Bfl_Hox5 | ABX39489 | ||
Bfl_Hox7 | ABX39491 | ||
Bugula turrita/Btu | Bryozoa (Ectoprocta) | Btu_Hox2 | AAS77225 |
Btu_Hox3 | AAS77226 | ||
Btu_Hox4a | AAS77227 | ||
Btu_Hox4b | AAS77228 | ||
Btu_Post2 | AAS77230 | ||
Caenorhabditis elegans/Cel | Nematoda | Cel_Hox1 | CAA34929 |
Ciona intestinalis/Cin | Chordata | Cin_Hox1 | NP_001122333 |
Cin_Hox2 | CAD59668 | ||
Cin_Hox4 | NP_001027781 | ||
Cin_Hox5 | NP_001027665 | ||
Drosophila melanogaster/Dme | Arthropoda | Dme_Hox1 | CAB57787 |
Dme_Hox2 | CAA45271 | ||
Dme_Hox3 | P09089 | ||
Dme_Hox4 | P07548 | ||
Dme_Hox5 | NP_524248 | ||
Dme_Hox7 | CAA27417 | ||
Dme_Dll | NP_726486 | ||
Euprymna scolopes/Esc | Mollusca | Esc_Hox1 | AAL25804 |
Esc_Hox3 | AAR16188 | ||
Esc_Hox5 | AAR16189 | ||
Esc_Hox7 | AAL25809 | ||
Esc_Post2 | AAL25812 | ||
Flaccisagitta enflata/Fen | Chaetognatha | Fen_Hox1 | ABS18809 |
Fen_Hox3 | ABS18810 | ||
Fen_Hox4 | ABS18811 | ||
Fen_Hox5 | ABS18812 | ||
Gibbula varia/Gva | Mollusca | Gva_Hox1 | ACX84671 |
Gva_Hox2 | ADJ18233 | ||
Gva_Hox3 | ADJ18232 | ||
Gva_Hox4 | ACX84672 | ||
Gva_Hox5 | ADJ18234 | ||
Gva_Hox7 | ADJ18235 | ||
Gva_Post2 | ACX84674 | ||
Haliotis asinina/Has | Mollusca | Has_Hox3 | AAK17185 |
Has_Hox4 | AAK11240 | ||
Has_Hox5 | AAF78248 | ||
Lingula anatina/Lan | Brachiopoda | Lan_Hox1 | AAD45587 |
Lan_Hox3 | AAD45588 | ||
Lan_Hox5 | AAD45589 | ||
Lan_Hox7 | AAD45590 | ||
Lan_Post2 | AAD45595 | ||
Lithobius atkinsoni/Lat | Arthropoda | Lat_Hox1 | AAL36907 |
Lat_Hox2 | AAL36908 | ||
Lat_Hox3 | AAL36906 | ||
Lat_Hox4 | AAL36902 | ||
Lat_Hox5 | AAL36909 | ||
Lat_Hox7 | AAL36901 | ||
Lineus sanguineus/Lsa | Nemertea | Lsa_Hox1 | CAA76295 |
Lsa_Hox3 | CAA76296 | ||
Mus musculus/Mmu | Chordata | Mmu_Hox1 | NP_034579 |
Mmu_Hox2 | NP_034581 | ||
Mmu_Hox3 | NP_034582 | ||
Mmu_Hox4 | NP_032291 | ||
Mmu_Hox5 | NP_034583 | ||
Mmu_Hox7 | NP_034585 | ||
Nymphon gracile/Ngr | Arthropoda | Ngr_Hox1 | ABD46723 |
Ngr_Hox2 | ABD46725 | ||
Ngr_Hox5 | ABD46729 | ||
Ngr_Hox7 | ABD46732 | ||
Nereis virens/Nvi | Annelida | Nvi_Hox1 | AAD46166 |
Nvi_Hox2 | AAD46167 | ||
Nvi_Hox4 | AAD46169 | ||
Nvi_Hox5 | AAD46170 | ||
Nvi_Hox7 | ABD04657 | ||
Nvi_Post2 | AAD46176 | ||
Platynereis dumerilii/Pdu | Annelida | Pdu_Hox3 | ABD04656 |
Pdu_Hox4 | ABD04658 | ||
Pdu_Hox5 | ABD04660 | ||
Pdu_Post2 | ABD04651 | ||
Pdu_Dlx1 | CAJ38799 | ||
Sacculina carcini/Sca | Arthropoda | Sca_Hox1 | ABB46347 |
Sca_Hox2 | AAD00340 | ||
Sca_Hox4 | AAD00345 | ||
Sca_Hox5 | AAM50457 | ||
Saccoglossus kowalevskii/Sko | Hemichordata | Sko_Hox1 | AAP79296 |
Sko_Hox2 | ABK00018 | ||
Sko_Hox3 | AAP79286 | ||
Sko_Hox4 | AAP79297 | ||
Sko_Hox5 | ABK00019 | ||
Sko_Hox7 | AAP79287 | ||
Symsagittifera roscoffensis/Sro | Acoelomorpha | Sro_Hox1 | AAN11404 |
Tribolium castaneum/Tca | Arthropoda | Tca_Hox1 | NP_001107762 |
Tca_Hox3 | AAK16424 | ||
Tca_Hox4 | AAK16423 | ||
Tca_Hox5 | AAK16422 |