Skip to main content

Table 1 Human and mouse unspliced EST clusters overlapping a predicted TSS peak in their putative 5’ region and their orientation relative to the surrounding RefSeq gene. RefSeq TSS are all unspliced EST cluster that overlap any 5’UTR or that are located completely within the upstream region of a RefSeq gene. TINs and PINs are defined as in Fig. 1. All unspliced EST cluster that have an overlap with the 3’UTR but not with the 5’ UTR are interpreted as uaRNAs. “Sense” and “Antisense” are relative to the reading direction of the RefSeq gene. “Ambiguous” clusters could not be assigned to an orientation because of conflicting information on their directions. The column “All” lists the number of corresponding unspliced EST clusters without considering an overlap with CAGE-tags

From: Evolution of the unspliced transcriptome

Species

Human

Mouse

Type

Sense

Antisense

Ambiguous

All

Sense

Antisense

Ambiguous

All

RefSeq TSS

3829

696

1269

12,337

4010

533

1307

9556

TINsa

1924

703

212

38,803

1082

255

132

20,020

5’ PINsa

880

15

116

2926

256

16

46

1527

3’ PINsa

312

119

73

5439

171

64

46

2902

uaRNAs

1833

246

709

17,331

1501

201

592

17,126

  1. aunspliced EST cluster overlapping 5’ UTR have been excluded for this analysis