Table 1 List of 53 examined bird species
From: Evolution of the avian β-defensin and cathelicidin genes
Scientific name | Common name | Abbreviation | Order | Family | Genus | GenBank Assembly ID | AvBD1 paralogues | AvBD3 paralogues | Pseudogenes | Genes not found | Cluster status |
|---|---|---|---|---|---|---|---|---|---|---|---|
Acanthisitta chloris | Rifleman | ACACH | Passeriformes | Acanthisittidae | Acanthisitta | GCA_000695815 | 2 | 5 | AvBD11, AvBD14 | fragmented | |
Amazona vittata | Puerto Rican parrot | AMAVI | Psittaciformes | Psittacidae | Amazona | GCA_000332375 | 2 | 1 | AvBD7, AvBD14 | fragmented | |
Anas platyrhynchos | American Pekin duck | ANAPL | Anseriformes | Anatidae | Anas | GCA_000355885 | 1 | 6 | fragmented | ||
Apaloderma vittatum | Bar-tailed trogon | APAVI | Trogoniformes | Trogonidae | Apaloderma | GCA_000703405 | 1 | 2 | AvBD14 | fragmented | |
Aptenodytes forsteri | Emperor penguin | APTFO | Sphenisciformes | Spheniscidae | Aptenodytes | GCA_000699145 | 1 | 1 | intact | ||
Balearica regulorum gibbericeps | Grey crowned crane | BALRE | Gruiformes | Gruidae | Balearica | GCA_000709895 | 1 | 2 | fragmented | ||
Buceros rhinoceros silvestris | Rhinoceros hornbill | BUCRH | Bucerotiformes | Bucerotidae | Buceros | GCA_000710305 | 1 | 0 | AvBD3, AvBD12 | fragmented | |
Calypte anna | Anna’s hummingbird | CALAN | Trochiliformes | Trochilidae | Calypte | GCA_000699085 | 1 | 1 | AvBD7, AvBD14 | AvBD11 | fragmented |
Caprimulgus carolinensis | Chuck-will’s-widow | CAPCA | Caprimulgiformes | Caprimulgidae | Antrostomus | GCA_000700745 | 2 | 1 | fragmented | ||
Cariama cristata | Red-legged seriema | CARCR | Gruiformes | Cariamidae | Cariama | GCA_000690535 | 2 | 1 | fragmented | ||
Cathartes aura | Turkey vulture | CATAU | Cathartiformes | Cathartidae | Cathartes | GCA_000699945 | 1 | 0 | AvBD7 | fragmented | |
Chaetura pelagica | Chimney swift | CHAPE | Apodiformes | Apodidae | Chaetura | GCA_000747805 | 1 | 3 | AvBD7, AvBD11 | fragmented | |
Charadrius vociferus | Killdeer | CHAVO | Charadriiformes | Charadriidae | Charadrius | GCA_000708025 | 3 | 2 | fragmented | ||
Chlamydotis undulata | Houbara bustard | CHLUN | Gruiformes | Otididae | Chlamydotis | GCA_000695195 | 2 | 1 | AvBD14 | fragmented | |
Colinus virginianus | Northern bobwhite | COLVI | Galliformes | Odontophoridae | Colinus | GCA_000599465 | 1 | 1 | fragmenteda | ||
Colius striatus | Speckled mousebird | COLST | Coliiformes | Coliidae | Colius | GCA_000690715 | 1 | 1 | AvBD13 | fragmenteda | |
Columba livia | Rock dove | COLLI | Columbiformes | Columbidae | Columba | GCA_000337935 | 1 | 2 | AvBD14 | fragmenteda | |
Corvus brachyrhynchos | American crow | CORBR | Passeriformes | Corvidae | Corvus | GCA_000691975 | 2 | 6 | AvBD14 | fragmented | |
Cuculus canorus | Common cuckoo | CUCCA | Cuculiformes | Cuculidae | Cuculus | GCA_000709325 | 2 | 2 | fragmenteda | ||
Egretta garzetta | Little egret | EGRGA | Ciconiiformes | Ardeidae | Egretta | GCA_000687185 | 2 | 1 | AvBD14 | fragmented | |
Eurypyga helias | Sunbittern | EURHE | Gruiformes | Eurypygidae | Eurypyga | GCA_000690775 | 1 | 1 | AvBD7 | AvBD14 | fragmented |
Falco cherrug | Saker falcon | FALCH | Falconiformes | Falconidae | Falco | GCA_000337975 | 3 | 1 | AvBD14 | fragmenteda | |
Falco peregrinus | Peregrine falcon | FALPE | Falconiformes | Falconidae | Falco | GCA_000337955 | 2 | 1 | AvBD14 | AvBD3.3 | fragmented |
Ficedula albicollis | Collared flycatcher | FICAL | Passeriformes | Muscicapidae | Ficedula | GCA_000247815 | 2 | 6 | AvBD14 | fragmented | |
Fulmarus glacialis | Northern fulmar | FULGL | Procellariiformes | Procellariidae | Fulmarus | GCA_000690835 | 2 | 1 | AvBD1.1 | Exon2 AvBD13 | fragmented |
Gallus gallus | Chicken | GALGA | Galliformes | Phasianidae | Gallus | GCA_000002315 | 1 | 1 | intact | ||
Gavia stellata | Red-throated loon | GAVST | Gaviiformes | Gaviidae | Gavia | GCA_000690875 | 1 | 1 | AvBD14 | fragmented | |
Geospiza fortis | Medium ground finch | GEOFO | Passeriformes | Fringillidae | Geospiza | GCA_000277835 | 3 | 9 | AvBD14 | intact | |
Haliaeetus albicilla | White-tailed eagle | HALAL | Accipitriformes | Accipitridae | Haliaeetus | GCA_000691405 | 1 | 1 | AvBD13 | fragmented | |
Leptosomus discolor | Cuckoo roller | LEPDI | Coraciiformes | Leptosomidae | Leptosomus | GCA_000691785 | 1 | 1 | AvBD2 | fragmented | |
Manacus vitellinus | Golden-collared manakin | MANVI | Passeriformes | Pipridae | Manacus | GCA_000692015 | 1 | 7 | AvBD14 | fragmented | |
Meleagris gallopavo | Turkey | MELGA | Galliformes | Phasianidae | Meleagris | GCA_000146605 | 1 | 1 | intact | ||
Melopsittacus undulatus | Budgerigar | MELUN | Psittaciformes | Psittacidae | Melopsittacus | GCA_000238935 | 2 | 1 | AvBD7, AvBD14 | intact | |
Merops nubicus | Carmine bee-eater | MERNU | Coraciiformes | Meropidae | Merops | GCA_000691845 | 1 | 1 | fragmented | ||
Mesitornis unicolor | Brown roatelo | MESUN | Gruiformes | Mesitornithidae | Mesitornis | GCA_000695765 | 2 | 3 | AvBD14 | fragmented | |
Nestor notabilis | Kea | NESNO | Psittaciformes | Psittacidae | Nestor | GCA_000696875 | 1 | 1 | AvBD7 | AvBD14 | fragmented |
Nipponia nippon | Crested ibis | NIPNI | Ciconiiformes | Threskiornithidae | Nipponia | GCA_000708225 | 2 | 1 | intact | ||
Opisthocomus hoazin | Hoatzin | OPIHO | Opisthocomiformes | Opisthocomidae | Opisthocomus | GCA_000692075 | 1 | 1 | AvBD9 | fragmenteda | |
Pelecanus crispus | Dalmatian pelican | PELCR | Pelecaniformes | Pelecanidae | Pelecanus | GCA_000687375 | 1 | 1 | Exon 2 AvBD13 | fragmenteda | |
Phaethon lepturus | White-tailed tropicbird | PHALE | Phaethontiformes | Phaethontidae | Phaethon | GCA_000687285 | 2 | 2 | fragmented | ||
Phalacrocorax carbo | Great cormorant | PHACA | Pelecaniformes | Phalacrocoracidae | Phalacrocorax | GCA_000708925 | 1 | 1 | AvBD4, AvBD11, AvBD14 | fragmented | |
Phoenicopterus ruber | American flamingo | PHORU | Phoenicopteriformes | Phoenicopteridae | Phoenicopterus | GCA_000687265 | 2 | 2 | AvBD14 | fragmented | |
Picoides pubescens | Downy woodpecker | PICPU | Piciformes | Picidae | Picoides | GCA_000699005 | 1 | 1 | AvBD7 | fragmented | |
Podiceps cristatus | Great crested grebe | PODCR | Podicipediformes | Podicipedidae | Podiceps | GCA_000699545 | 2 | 1 | AvBD14 | fragmented | |
Pseudopodoces humilis | Tibetan ground-tit | PSEHU | Passeriformes | Paridae | Pseudopodoces | GCA_000331425 | 2 | 7 | AvBD14 | intact | |
Pterocles gutturalis | Yellow-throated sandgrouse | PTEGU | Ciconiiformes | Pteroclidae | Pterocles | GCA_000699245 | 2 | 1 | fragmented | ||
Pygoscelis adeliae | Adelie penguin | PYGAD | Sphenisciformes | Spheniscidae | Pygoscelis | GCA_000699105 | 1 | 1 | intact | ||
Struthio camelus | African ostrich | STRCA | Struthioniformes | Struthionidae | Struthio | GCA_000698965 | 2 | 2 | fragmented | ||
Taeniopygia guttata | Zebra finch | TAEGU | Passeriformes | Estrildidae | Taeniopygia | GCA_000151805 | 3 | 9 | AvBD14 | intact | |
Tauraco erythrolophus | Red-crested turaco | TAUER | Musophagiformes | Musophagidae | Tauraco | GCA_000709365 | 2 | 2 | AvBD7 | AvBD14 | fragmented |
Tinamus major | Great tinamou | TINMA | Tinamiformes | Tinamidae | Tinamus | GCA_000705375 | 1 | 1 | fragmented | ||
Tyto alba | Barn owl | TYTAL | Strigiformes | Tytonidae | Tyto | GCA_000687205 | 1 | 1 | AvBD5, AvBD13, AvBD14 | fragmented | |
Zonotrichia albicollis | White-throated sparrow | ZONAL | Passeriformes | Fringillidae | Zonotrichia | GCA_000385455 | 2 | 14 | AvBD14 | fragmented |