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Table 1 Chlorophycean taxa whose chloroplast genomes were sequenced in this study

From: Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae)

Taxa

Sourcea

Clade

Accession nob

Sequencing method

Chlorophyceae incertae sedis

    

 Jenufa minuta

CAUP H8102

 

[GenBank:KT625414]*

Roche 454

 Jenufa perforata

CAUP H8101

 

[GenBank:KT625413]*

Illumina

Sphaeropleales

    

 Bracteacoccus giganteus

UTEX 1251

Bracteacoccaceae

[GenBank:KT625421]*

Roche 454

 Mychonastes jurisii

SAG 37.98

Mychonastaceae

[GenBank:KT625411]*

Roche 454

Chlamydomonadalesc

    

 Golenkinia longispicula

SAG 73.80

Golenkinia

[GenBank:KT625092 - KT625150]

Roche 454

 Treubaria triappendiculata

SAG 38.83

Treubarinia

[GenBank:KT625410]*

Roche 454

 Hafniomonas laevis

NIES 257

Hafniomonas

[GenBank:KT625415]*

Roche 454

 Carteria cerasiformis

NIES 425

Crucicarteria

[GenBank:KT625420]*

Roche 454

 Carteria crucifera

UTEX 432

Crucicarteria

[GenBank:KT624870 - KT624932]

Roche 454

 Carteria sp

SAG 8–5

Radicarteria

[GenBank:KT625419]*

Roche 454

 Chloromonas typhlos d

UTEX LB 1969

Chloromonadinia

[GenBank:KT624630 - KT624716]

Roche 454

 Chloromonas radiata

UTEX 966

Chloromonadinia

[GenBank:KT625008 - KT625084]

Roche 454

 Oogamochlamys gigantea

SAG 44.91

Oogamochlamydinia

[GenBank:KT625412]*

Illumina

 Lobochlamys segnis

SAG 9.83

Oogamochlamydinia

[GenBank:KT624806 - KT624869]

Roche 454

 Lobochlamys culleus

SAG 19.72

Oogamochlamydinia

[GenBank:KT625151 - KT625204]

Roche 454

 Chlamydomonas asymmetrica

SAG 70.72

Reinhardtinia

[GenBank:KT624933 - KT625007]

Roche 454

 Phacotus lenticularis

SAG 61–1

Phacotinia

[GenBank:KT625422]*

Illumina

 Microglena monadina e

SAG 31.72

Monadinia

[GenBank:KT624717 - KT624805]

Illumina

 Characiochloris acuminata

SAG 31.95

Characiosiphonia

[GenBank:KT625418]*

Illumina

 Chlamydomonas applanata

SAG 11–9

Polytominia

[GenBank:KT625417]*

Roche 454

 Stephanosphaera pluvialis

SAG 78-1a

Stephanosphaerinia

[GenBank:KT625299 - KT625409]

Illumina

 Chloromonas perforata

SAG 11–43

Stephanosphaerinia

[GenBank:KT625416]*

Illumina

 Haematococcus lacustris

SAG 34-1b

Chlorogonia

[GenBank:KT625205 - KT625298]

Illumina

 Chlorogonium capillatum

UTEX 11

Chlorogonia

[GenBank:KT625085 - KT625091]

Illumina

  1. aThe taxa originate from the culture collections of algae at the University of Goettingen (SAG, [67]), the University of Texas at Austin (UTEX, [68]), the National Institute of Environmental Studies in Tsukuba (NIES, [69]), and Charles University in Prague (CAUP, [70])
  2. bThe GenBank accession number of the chloroplast genome is given for each taxon. The asterisks denote the genomes that were completely sequenced
  3. cThe clade designation of the chlamydomonadelean taxa follows the PhyloCode classification scheme of Nakada et al. [16]
  4. dPreviously designated as Chlamydomonas nivalis
  5. ePreviously designated as Chlamydomonas monadina
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BMC Ecology and Evolution

ISSN: 2730-7182

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