Table 2 Likelihood scores (2Δl) for testing hypotheses for branch models in PAML
From: Adaptive evolution in the toxicity of a spider’s venom enzymes
Null Hypothesis | Assumption made | Models compared | 2Δl | P |
|---|---|---|---|---|
A. (ωL = ωG) = ω0 | ωL = ωG | A X D | 37.81 | 7.81 x 10−10 |
B. ωL = ω0 | ωG = ω0 | A X B | 36.50 | 1.53 x 10−09 |
C. ωL = ω0 | ωG free | C X E | 36.64 | 7.29 x 10−09 |
D. ωG = ω0 | ωL = ω0 | A X C | 1.65 | 1.99 x 10−01 |
E. ωG = ω0 | ωL free | B X E | 1.78 | 1.81 x 10−01 |
F. ω constant | No Free Ratio | A X K | 675.84 | 5.99 x 10−56 |
A’. (ωL = ωG) ≤ 1 | ωL = ωG | D X H | 46.50 | 9.18 x 10−12 |
B’. ωL ≤ 1 | ωG = ω0 | B X F | 46.99 | 7.15 x 10−12 |
C’. ωL ≤ 1 | ωG free | E X I | 48.72 | 2.96 x 10−12 |
D’. ωG ≤ 1 | ωL = ω0 | C X G | 0.37 | 5.50 x 10−01 |
E'. ωG ≤ 1 | ωL free | E X J | 2e-05 | 9.96 x 10−01 |