TY - JOUR AU - Brandt, A. AU - Gooday, A. J. AU - Brandao, S. N. AU - Brix, S. AU - Brökeland, W. AU - Cedhagen, T. PY - 2007 DA - 2007// TI - First insights into the biodiversity and biogeography of the Southern Ocean deep sea JO - Nature VL - 447 UR - https://doi.org/10.1038/nature05827 DO - 10.1038/nature05827 ID - Brandt2007 ER - TY - JOUR AU - Clarke, A. PY - 2008 DA - 2008// TI - Antarctic marine benthic diversity: patterns and processes JO - J Exp Mar Biol Ecol VL - 366 UR - https://doi.org/10.1016/j.jembe.2008.07.008 DO - 10.1016/j.jembe.2008.07.008 ID - Clarke2008 ER - TY - JOUR AU - Griffiths, H. J. PY - 2010 DA - 2010// TI - Antarctic marine biodiversity – what do we know about the distribution of life in the Southern Ocean? JO - PLoS One VL - 5 UR - https://doi.org/10.1371/journal.pone.0011683 DO - 10.1371/journal.pone.0011683 ID - Griffiths2010 ER - TY - JOUR AU - Krabbe, K. AU - Leese, F. AU - Mayer, C. AU - Tollrian, R. AU - Held, C. PY - 2010 DA - 2010// TI - Cryptic mitochondrial lineages in the widespread pycnogonid Colossendeis megalonyx Hoek, 1881 from Antarctic and Subantarctic waters JO - Polar Biol VL - 33 UR - https://doi.org/10.1007/s00300-009-0703-5 DO - 10.1007/s00300-009-0703-5 ID - Krabbe2010 ER - TY - JOUR AU - Clark, A. AU - Johnston, N. M. PY - 2003 DA - 2003// TI - Antarctic marine benthic diversity JO - Oceanogr Mar Biol Annu Rev VL - 41 ID - Clark2003 ER - TY - JOUR AU - Gutt, J. AU - Sirenko, B. I. AU - Smirnov, I. S. AU - Arntz, W. E. PY - 2004 DA - 2004// TI - How many macrozoobenthic species might inhabit the Antarctic shelf? JO - Antarct Sci VL - 16 UR - https://doi.org/10.1017/S0954102004001750 DO - 10.1017/S0954102004001750 ID - Gutt2004 ER - TY - JOUR AU - Barker, P. F. AU - Filippelli, G. M. AU - Florindo, F. AU - Martin, E. E. AU - Scher, H. D. PY - 2007 DA - 2007// TI - Onset and role of the Antarctic Circumpolar Current JO - Deep Sea Res II VL - 54 UR - https://doi.org/10.1016/j.dsr2.2007.07.028 DO - 10.1016/j.dsr2.2007.07.028 ID - Barker2007 ER - TY - JOUR AU - Barker, P. F. AU - Thomas, E. PY - 2004 DA - 2004// TI - Origin, signature and palaeoclimatic influence of the Antarctic Circumpolar Current JO - Earth Sci Rev VL - 66 UR - https://doi.org/10.1016/j.earscirev.2003.10.003 DO - 10.1016/j.earscirev.2003.10.003 ID - Barker2004 ER - TY - JOUR AU - Orsi, A. H. AU - Whitworth, T. AU - Nowlin, W. PY - 1995 DA - 1995// TI - On the meridional extent and fronts of the Antarctic Circumpolar Current JO - Deep Sea Res I VL - 42 UR - https://doi.org/10.1016/0967-0637(95)00021-W DO - 10.1016/0967-0637(95)00021-W ID - Orsi1995 ER - TY - JOUR AU - Hunter, R. L. AU - Halanych, K. M. PY - 2008 DA - 2008// TI - Evaluating connectivity in the brooding brittle star Astrotoma agassizii across the Drake Passage in the Southern Ocean JO - J Hered VL - 99 UR - https://doi.org/10.1093/jhered/esm119 DO - 10.1093/jhered/esm119 ID - Hunter2008 ER - TY - JOUR AU - Page, T. J. AU - Linse, K. PY - 2002 DA - 2002// TI - More evidence of speciation and dispersal across the Antarctic Polar Front through molecular systematics of Southern Ocean Limatula (Bivalvia: Limidae) JO - Polar Biol VL - 25 ID - Page2002 ER - TY - JOUR AU - Janosik, A. M. AU - Mahon, A. R. AU - Halanych, K. M. PY - 2011 DA - 2011// TI - Evolutionary history of Southern Ocean Odontaster sea star species (Odontasteridae; Asteroidea) JO - Polar Biol VL - 34 UR - https://doi.org/10.1007/s00300-010-0916-7 DO - 10.1007/s00300-010-0916-7 ID - Janosik2011 ER - TY - JOUR AU - Thornhill, D. J. AU - Mahon, A. R. AU - Norenburg, J. L. AU - Halanych, K. M. PY - 2008 DA - 2008// TI - Open-ocean barriers to dispersal: a test case with the Antarctic Polar Front and the ribbon worm Parborlasia corrugatus (Nemertea: Lineidae) JO - Mol Ecol VL - 17 UR - https://doi.org/10.1111/j.1365-294X.2008.03970.x DO - 10.1111/j.1365-294X.2008.03970.x ID - Thornhill2008 ER - TY - JOUR AU - Clarke, A. AU - Barnes, D. K. A. AU - Hodgson, D. A. PY - 2005 DA - 2005// TI - How isolated is Antarctica? JO - TRENDS Ecol Evol VL - 20 UR - https://doi.org/10.1016/j.tree.2004.10.004 DO - 10.1016/j.tree.2004.10.004 ID - Clarke2005 ER - TY - JOUR AU - Paz, A. AU - Ibáñez, R. AU - Lips, K. R. AU - Crawford, A. J. PY - 2015 DA - 2015// TI - Testing the role of ecology and life history in structuring genetic variation across a landscape: A comparative ecophylogeographic approach JO - Mol Ecol VL - 24 UR - https://doi.org/10.1111/mec.13275 DO - 10.1111/mec.13275 ID - Paz2015 ER - TY - JOUR AU - Lewis, P. N. AU - Hewitt, C. L. AU - Riddle, M. AU - McMinn, A. PY - 2003 DA - 2003// TI - Marine introductions in the Southern Ocean: an unrecognised hazard to biodiversity JO - Mar Pollut Bull VL - 46 UR - https://doi.org/10.1016/S0025-326X(02)00364-8 DO - 10.1016/S0025-326X(02)00364-8 ID - Lewis2003 ER - TY - JOUR AU - Kahng, S. E. AU - Benayahu, Y. AU - Lasker, H. R. PY - 2011 DA - 2011// TI - Sexual reproduction in octocorals JO - Mar Ecol Prog Ser VL - 443 UR - https://doi.org/10.3354/meps09414 DO - 10.3354/meps09414 ID - Kahng2011 ER - TY - JOUR AU - Gutiérrez-Rodríguez, C. AU - Lasker, H. PY - 2005 DA - 2005// TI - Reproductive biology, development, and planula behavior in the Caribbean gorgonian Pseudopterogorgia elisabethae JO - Invertebr Biol VL - 123 UR - https://doi.org/10.1111/j.1744-7410.2004.tb00141.x DO - 10.1111/j.1744-7410.2004.tb00141.x ID - Gutiérrez-Rodríguez2005 ER - TY - JOUR AU - Arndt, A. AU - Smith, M. J. PY - 1998 DA - 1998// TI - Genetic diversity and population structure in two species of sea cucumber: differing patterns according to mode of development JO - Mol Ecol VL - 7 UR - https://doi.org/10.1046/j.1365-294x.1998.00429.x DO - 10.1046/j.1365-294x.1998.00429.x ID - Arndt1998 ER - TY - JOUR AU - Sherman, C. D. H. AU - Hunt, A. AU - Ayre, D. J. PY - 2008 DA - 2008// TI - Is life history a barrier to dispersal? Contrasting patterns of genetic differentiation along an oceanographically complex coast JO - Biol J Linn Soc VL - 95 UR - https://doi.org/10.1111/j.1095-8312.2008.01044.x DO - 10.1111/j.1095-8312.2008.01044.x ID - Sherman2008 ER - TY - JOUR AU - Bayer, F. M. PY - 1996 DA - 1996// TI - New Primnoid gorgonians (Coelenterata:Octocorallia) from Antarctic waters JO - Bull Mar Sci VL - 58 ID - Bayer1996 ER - TY - BOOK AU - Gray, J. E. PY - 1870 DA - 1870// TI - Catalogue of the lithophytes or stony corals in the collection of the British Museum PB - British Museum CY - London ID - Gray1870 ER - TY - CHAP AU - Beerli, P. ED - Bertorelle, G. ED - Bruford, M. W. ED - Hauffe, H. C. ED - Rizzoli, A. ED - Vernesi, C. PY - 2009 DA - 2009// TI - How to use MIGRATE or why are Markov chains montecarlo programs difficult to use? BT - Population Genetics for Animal Conservation PB - Cambridge University Press CY - Cambridge ID - Beerli2009 ER - TY - JOUR AU - Bostock, H. C. AU - Barrows, T. T. AU - Carter, L. AU - Chase, Z. AU - Cortese, G. AU - Dunbar, G. B. PY - 2013 DA - 2013// TI - A review of the Australian-New Zealand sector of the Southern Ocean over the last 30 ka (Aus-INTIMATE project) JO - Quat Sci Rev VL - 74 UR - https://doi.org/10.1016/j.quascirev.2012.07.018 DO - 10.1016/j.quascirev.2012.07.018 ID - Bostock2013 ER - TY - JOUR AU - Wong, A. P. S. AU - Bindoff, N. L. AU - Church, J. A. PY - 1999 DA - 1999// TI - Large-scale freshening of intermediate waters in the Pacific and Indian oceans JO - Nature VL - 400 UR - https://doi.org/10.1038/22733 DO - 10.1038/22733 ID - Wong1999 ER - TY - JOUR AU - Lorrey, A. M. AU - Vandergoes, M. AU - Almond, P. AU - Renwick, J. AU - Stephens, T. AU - Bostock, H. PY - 2012 DA - 2012// TI - Palaeocirculation across New Zealand during the last glacial maximum at ~21 ka JO - Quat Sci Rev VL - 36 UR - https://doi.org/10.1016/j.quascirev.2011.09.025 DO - 10.1016/j.quascirev.2011.09.025 ID - Lorrey2012 ER - TY - JOUR AU - Neil, H. L. AU - Carter, L. AU - Morris, M. Y. PY - 2004 DA - 2004// TI - Thermal isolation of Campbell Plateau, New Zealand, by the Antarctic Circumpolar Current over the past 130 kyr JO - Paleoceanography VL - 19 UR - https://doi.org/10.1029/2003PA000975 DO - 10.1029/2003PA000975 ID - Neil2004 ER - TY - JOUR AU - Dambach, J. AU - Thatje, S. AU - Rödder, D. AU - Basher, Z. AU - Raupach, M. J. PY - 2012 DA - 2012// TI - Effects of Late-Cenozoic glaciation on habitat availability in Antarctic benthic shrimps (Crustacea: Decapoda: Caridea) JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0046283 DO - 10.1371/journal.pone.0046283 ID - Dambach2012 ER - TY - JOUR AU - Pyron, R. A. AU - Burbrink, F. T. PY - 2010 DA - 2010// TI - Hard and soft allopatry: physically and ecologically mediated modes of geographic speciation JO - J Biogeogr VL - 37 ID - Pyron2010 ER - TY - JOUR AU - Luiz, O. J. AU - Madin, J. S. AU - Robertson, D. R. AU - Rocha, L. A. AU - Wirtz, P. AU - Floeter, S. R. PY - 2012 DA - 2012// TI - Ecological traits influencing range expansion across large oceanic dispersal barriers: insights from tropical Atlantic reef fishes JO - Proc R Soc B Biol Sci VL - 279 UR - https://doi.org/10.1098/rspb.2011.1525 DO - 10.1098/rspb.2011.1525 ID - Luiz2012 ER - TY - JOUR AU - Whitworth, T. AU - Nowlin, W. D. AU - Worley, S. J. PY - 1982 DA - 1982// TI - The net transport of the Antarctic Circumpolar Current through Drake Passage JO - J Phys Oceanogr VL - 12 UR - https://doi.org/2.0.CO;2 DO - 2.0.CO;2 ID - Whitworth1982 ER - TY - JOUR AU - Havermans, C. AU - Sonet, G. AU - d’Udekem d’Acoz, C. AU - Nagy, Z. T. AU - Martin, P. AU - Brix, S. PY - 2013 DA - 2013// TI - Genetic and morphological divergences in the cosmopolitan deep-sea amphipod Eurythenes gryllus reveal a diverse abyss and a bipolar species JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0074218 DO - 10.1371/journal.pone.0074218 ID - Havermans2013 ER - TY - JOUR AU - Bargelloni, L. AU - Marcato, S. AU - Zane, L. AU - Patarnello, T. PY - 2000 DA - 2000// TI - Mitochondrial phylogeny of Notothenioids: a molecular approach to Antarctic fish evolution and biogeography JO - Syst Biol VL - 49 UR - https://doi.org/10.1080/10635150050207429 DO - 10.1080/10635150050207429 ID - Bargelloni2000 ER - TY - JOUR AU - Rodrıguez, E. AU - Lopez-Gonzalez, P. J. AU - Gili, J. M. PY - 2007 DA - 2007// TI - Biogeography of Antarctic sea anemones (Anthozoa, Actiniaria): What do they tell us about the origin of the Antarctic benthic fauna? JO - Deep Sea Res II VL - 54 UR - https://doi.org/10.1016/j.dsr2.2007.07.013 DO - 10.1016/j.dsr2.2007.07.013 ID - Rodrıguez2007 ER - TY - JOUR AU - Herrera, S. AU - Shank, T. M. AU - Sánchez, J. A. PY - 2012 DA - 2012// TI - Spatial and temporal patterns of genetic variation in the widespread antitropical deep-sea coral Paragorgia arborea JO - Mol Ecol VL - 21 UR - https://doi.org/10.1111/mec.12074 DO - 10.1111/mec.12074 ID - Herrera2012 ER - TY - JOUR AU - Cheng, C. -. H. C. AU - Chen, L. AU - Near, T. J. AU - Jin, Y. PY - 2003 DA - 2003// TI - Functional antifreeze glycoprotein genes in temperate-water New Zealand Nototheniid fish infer an Antarctic evolutionary origin JO - Mol Biol Evol VL - 20 UR - https://doi.org/10.1093/molbev/msg208 DO - 10.1093/molbev/msg208 ID - Cheng2003 ER - TY - JOUR AU - Cairns, S. D. AU - Bayer, F. M. PY - 2009 DA - 2009// TI - A generic reevision and phylogenetic analysis on the Primnoidae (Cnidaria:Octocorallia) JO - Smithson Contrib Zool VL - 629 UR - https://doi.org/10.5479/si.00810282.629 DO - 10.5479/si.00810282.629 ID - Cairns2009 ER - TY - JOUR AU - Butzin, M. AU - Lohmann, I. G. AU - Bickertl, T. PY - 2011 DA - 2011// TI - Miocene ocean circulation inferred from marine carbon cycle modeling combined with benthic isotope records JO - Paleoceanography VL - 26 UR - https://doi.org/10.1029/2009PA001901 DO - 10.1029/2009PA001901 ID - Butzin2011 ER - TY - STD TI - Kennett JP. The Miocene Ocean: Paleoceanography and Biogeography. The Geological Society of America Inc. Boulder, Colorado; 1985. ID - ref39 ER - TY - JOUR AU - Shank, T. M. AU - Black, M. B. AU - Halanych, K. M. AU - Lutz, R. A. AU - Vrijenhoek, R. C. PY - 1999 DA - 1999// TI - Miocene radiation of deep-sea hydrothermal vent shrimp (Caridea: Bresiliidae): evidence from mitochondrial Cytochrome Oxidase Subunit I JO - Mol Phylogenet Evol VL - 13 UR - https://doi.org/10.1006/mpev.1999.0642 DO - 10.1006/mpev.1999.0642 ID - Shank1999 ER - TY - CHAP AU - Woodruff, F. ED - Kennett, J. P. PY - 1985 DA - 1985// TI - Changes in Miocene deep-sea benthic foraminiferal distribution in the Pacific Ocean: Relationship to paleoceanography BT - The Miocene Ocean: Paleoceanography and Biogeography PB - Inc CY - The Geological Society of America UR - https://doi.org/10.1130/MEM163-p131 DO - 10.1130/MEM163-p131 ID - Woodruff1985 ER - TY - JOUR AU - Tian, J. AU - Shevenell, A. AU - Wang, P. AU - Zhao, Q. AU - Li, Q. AU - Cheng, X. PY - 2009 DA - 2009// TI - Reorganization of pacific deep waters linked to middle Miocene Antarctic cryosphere expansion: a perspective from the South China Sea JO - Palaeogeogr Palaeoclimatol Palaeoecol VL - 284 UR - https://doi.org/10.1016/j.palaeo.2009.10.019 DO - 10.1016/j.palaeo.2009.10.019 ID - Tian2009 ER - TY - JOUR AU - Holbourn, A. AU - Kuhnt, W. AU - Frank, M. AU - Haley, B. A. PY - 2013 DA - 2013// TI - Changes in pacific ocean circulation following the miocene onset of permanent antarctic ice cover JO - Earth Planet Sci Lett VL - 365 UR - https://doi.org/10.1016/j.epsl.2013.01.020 DO - 10.1016/j.epsl.2013.01.020 ID - Holbourn2013 ER - TY - JOUR AU - Shevenell, A. E. AU - Kennett, J. P. AU - Lea, D. W. PY - 2008 DA - 2008// TI - Middle Miocene ice sheet dynamics, deep-sea temperatures, and carbon cycling: A Southern Ocean perspective JO - Geochem Geophys Geosyst VL - 9 UR - https://doi.org/10.1029/2007GC001736 DO - 10.1029/2007GC001736 ID - Shevenell2008 ER - TY - JOUR AU - Raupach, M. J. AU - Thatje, S. AU - Dambach, J. AU - Rehm, P. AU - Misof, B. AU - Leese, F. PY - 2010 DA - 2010// TI - Genetic homogeneity and circum-Antarctic distribution of two benthic shrimp species of the Southern Ocean, Chorismus antarcticus and Nematocarcinus lanceopes JO - Mar Biol VL - 157 UR - https://doi.org/10.1007/s00227-010-1451-3 DO - 10.1007/s00227-010-1451-3 ID - Raupach2010 ER - TY - JOUR AU - Ho, S. Y. W. PY - 2014 DA - 2014// TI - The changing face of the molecular evolutionary clock JO - Trends Ecol Evol VL - 29 UR - https://doi.org/10.1016/j.tree.2014.07.004 DO - 10.1016/j.tree.2014.07.004 ID - Ho2014 ER - TY - JOUR AU - Quattrini, A. M. AU - Georgian, S. E. AU - Byrnes, L. AU - Stevens, A. AU - Falco, R. AU - Cordes, E. E. PY - 2013 DA - 2013// TI - Niche divergence by deep-sea octocorals in the genus Callogorgia across the continental slope of the Gulf of Mexico JO - Mol Ecol VL - 22 UR - https://doi.org/10.1111/mec.12370 DO - 10.1111/mec.12370 ID - Quattrini2013 ER - TY - JOUR AU - Taylor, M. L. AU - Rogers, A. D. PY - 2015 DA - 2015// TI - Evolutionary dynamics of a common sub-Antarctic octocoral family JO - Mol Phylogenet Evol VL - 84 UR - https://doi.org/10.1016/j.ympev.2014.11.008 DO - 10.1016/j.ympev.2014.11.008 ID - Taylor2015 ER - TY - JOUR AU - Helm, C. AU - Schülke, I. PY - 2003 DA - 2003// TI - An almost complete specimen of the Late Cretaceous (Campanian) octocoral ‘Isis’ ramosa Voigt (Gorgonacea) from the Lower Saxony Basin, northwest Germany JO - Cretac Res VL - 24 UR - https://doi.org/10.1016/S0195-6671(03)00020-X DO - 10.1016/S0195-6671(03)00020-X ID - Helm2003 ER - TY - BOOK AU - Bayer, F. M. AU - Grasshoff, M. AU - Verseveldt, J. PY - 1983 DA - 1983// TI - Illustrated trilingual glossary of morphological and anatomical terms applied to Octocorallia PB - Brill CY - Leiden ID - Bayer1983 ER - TY - JOUR AU - Taylor, M. L. AU - Cairns, S. D. AU - Agnew, D. J. AU - Rogers, A. D. PY - 2013 DA - 2013// TI - A revision of the genus Thouarella Gray, 1870 (Octocorallia: Primnoidae), including an illustrated dichotomous key, a new species description, and comments on Plumarella Gray, 1870 and Dasystenella, Versluys, 1906 JO - Zootaxa VL - 3602 UR - https://doi.org/10.11646/zootaxa.3602.1.1 DO - 10.11646/zootaxa.3602.1.1 ID - Taylor2013 ER - TY - JOUR AU - Zapata-Guardiola, R. AU - López-González, P. J. PY - 2010 DA - 2010// TI - Redescription of Thouarella brucei Thomson and Ritchie, 1906 (Cnidaria: Octocorallia: Primnoidae) and description of two new Antarctic primnoid species JO - Zootaxa VL - 2616 ID - Zapata-Guardiola2010 ER - TY - JOUR AU - Coffroth, M. A. AU - Lasker, H. R. AU - Diamond, M. E. AU - Bruenn, J. A. AU - Berringham, E. PY - 1992 DA - 1992// TI - DNA fingerprints of a gorgonian coral: a method for detecting clonal structure in a vegetative species JO - Mar Biol VL - 114 UR - https://doi.org/10.1007/BF00349534 DO - 10.1007/BF00349534 ID - Coffroth1992 ER - TY - JOUR AU - Aguilar, C. AU - Sánchez, J. A. PY - 2007 DA - 2007// TI - Molecular morphometrics: contribution of ITS2 sequences and predicted RNA secondary structures to octocoral systematics JO - Bull Mar Sci VL - 81 ID - Aguilar2007 ER - TY - JOUR AU - Medina, M. AU - Collins, A. G. AU - Silberman, J. D. AU - Sogin, M. L. PY - 2001 DA - 2001// TI - Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA JO - Proc Natl Acad Sci U S A VL - 98 UR - https://doi.org/10.1073/pnas.171316998 DO - 10.1073/pnas.171316998 ID - Medina2001 ER - TY - JOUR AU - Rijk, P. AU - Peer, Y. AU - Chapelle, S. AU - Wachter, R. PY - 1994 DA - 1994// TI - Database on the structure of large ribosomal subunit RNA JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.17.3495 DO - 10.1093/nar/22.17.3495 ID - Rijk1994 ER - TY - JOUR AU - Hillis, D. M. AU - Dixon, M. T. PY - 1991 DA - 1991// TI - Ribosomal DNA: molecular evolution and phylogenetic inference JO - Q Rev Biol VL - 66 UR - https://doi.org/10.1086/417338 DO - 10.1086/417338 ID - Hillis1991 ER - TY - JOUR AU - Arnheim, N. AU - Krystal, M. AU - Schmickel, R. AU - Wilson, G. AU - Ryder, O. AU - Zimmer, E. PY - 1980 DA - 1980// TI - Molecular evidence for genetic exchanges among ribosomal genes on non-homologous chromosomes in man and apes JO - Proc Natl Acad Sci U S A Biol Sci VL - 77 UR - https://doi.org/10.1073/pnas.77.12.7323 DO - 10.1073/pnas.77.12.7323 ID - Arnheim1980 ER - TY - JOUR AU - Wei, N. V. AU - Wallace, C. C. AU - Dai, C. -. F. AU - Pillay, K. R. M. AU - Chen, C. A. PY - 2006 DA - 2006// TI - Analyses of the ribosomal Internal Transcribed Spacers (ITS) and 5.8S gene indicate that extremely high rDNA heterogeneity is a unique feature in the scleractinian coral genus Acropora (Scleractinia; Acroporidae) JO - Zool Stud VL - 45 ID - Wei2006 ER - TY - JOUR AU - Dorado, D. AU - Sánchez, J. A. PY - 2009 DA - 2009// TI - Internal transcribed Spacer 2 (ITS2) variation in the gorgonian coral Pseudopterogorgia bipinnata in Belize and Panama JO - Smithson Contrib Mar Sci VL - 38 ID - Dorado2009 ER - TY - JOUR AU - Chen, C. A. AU - Chang, C. -. C. AU - Wei, N. V. AU - Chen, C. -. H. AU - Lein, Y. -. T. AU - Lin, H. -. E. PY - 2004 DA - 2004// TI - Secondary structure and phylogenetic utility of the ribosomal Internal Transcribed Spacer 2 (ITS2) in scleractinian corals JO - Zool Stud VL - 43 ID - Chen2004 ER - TY - JOUR AU - Herrera, S. AU - Baco, A. AU - Sánchez, J. A. PY - 2010 DA - 2010// TI - Molecular systematics of the bubblegum coral genera (Paragorgiidae, Octocorallia) and description of a new deep-sea species JO - Mol Phylogenet Evol VL - 55 UR - https://doi.org/10.1016/j.ympev.2009.12.007 DO - 10.1016/j.ympev.2009.12.007 ID - Herrera2010 ER - TY - JOUR AU - Grajales, A. AU - Aguilar, C. AU - Sanchez, J. PY - 2007 DA - 2007// TI - Phylogenetic reconstruction using secondary structures of Internal Transcribed Spacer 2 (ITS2, rDNA): finding the molecular and morphological gap in Caribbean gorgonian corals JO - BMC Evol Biol VL - 7 UR - https://doi.org/10.1186/1471-2148-7-90 DO - 10.1186/1471-2148-7-90 ID - Grajales2007 ER - TY - JOUR AU - Dueñas, L. F. AU - Sánchez, J. A. PY - 2009 DA - 2009// TI - Character lability in deep-sea bamboo corals (Octocorallia, Isididae, Keratoisidinae) JO - Mar Ecol Prog Ser VL - 397 UR - https://doi.org/10.3354/meps08307 DO - 10.3354/meps08307 ID - Dueñas2009 ER - TY - JOUR AU - Vollmer, S. V. AU - Palumbi, S. R. PY - 2004 DA - 2004// TI - Testing the utility of Internally Transcribed Spacer sequences in coral phylogenetics JO - Mol Ecol VL - 13 UR - https://doi.org/10.1111/j.1365-294X.2004.02265.x DO - 10.1111/j.1365-294X.2004.02265.x ID - Vollmer2004 ER - TY - JOUR AU - Coleman, A. W. AU - Oppen, M. J. H. PY - 2008 DA - 2008// TI - Secondary structure of the rRNA ITS2 region reveals key evolutionary patterns in Acroporid corals JO - J Mol Evol VL - 67 UR - https://doi.org/10.1007/s00239-008-9160-y DO - 10.1007/s00239-008-9160-y ID - Coleman2008 ER - TY - JOUR AU - Forsman, Z. H. AU - Barshis, D. J. AU - Hunter, C. L. AU - Toonen, R. J. PY - 2009 DA - 2009// TI - Shape-shifting corals: molecular markers show morphology is evolutionarily plastic in Porites JO - BMC Evol Biol VL - 9 UR - https://doi.org/10.1186/1471-2148-9-45 DO - 10.1186/1471-2148-9-45 ID - Forsman2009 ER - TY - JOUR AU - Yasuda, N. AU - Taquet, C. AU - Nagai, S. AU - Fortes, M. AU - Fan, T. -. Y. AU - Harii, S. PY - 2015 DA - 2015// TI - Genetic diversity, paraphyly and incomplete lineage sorting of mtDNA, ITS2 and microsatellite flanking region in closely related Heliopora species (Octocorallia) JO - Mol Phylogenet Evol VL - 93 UR - https://doi.org/10.1016/j.ympev.2015.07.009 DO - 10.1016/j.ympev.2015.07.009 ID - Yasuda2015 ER - TY - JOUR AU - Baird, H. P. AU - Miller, K. J. AU - Stark, J. S. PY - 2011 DA - 2011// TI - Evidence of hidden biodiversity, ongoing speciation and diverse patterns of genetic structure in giant Antarctic amphipods JO - Mol Ecol VL - 20 UR - https://doi.org/10.1111/j.1365-294X.2011.05173.x DO - 10.1111/j.1365-294X.2011.05173.x ID - Baird2011 ER - TY - JOUR AU - Grundmann, M. AU - Ansell, S. W. AU - Russell, S. J. AU - Koch, M. A. AU - Vogel, J. C. PY - 2007 DA - 2007// TI - Genetic structure of the widespread and common Mediterranean bryophyte Pleurochaete squarrosa (Brid.) Lindb. (Pottiaceae)- evidence from nuclear and plastidic DNA sequence variation and allozymes JO - Mol Ecol VL - 16 UR - https://doi.org/10.1111/j.1365-294X.2007.03181.x DO - 10.1111/j.1365-294X.2007.03181.x ID - Grundmann2007 ER - TY - JOUR AU - Oh, H. K. AU - Yoon, H. J. AU - Kim, M. J. AU - Jeong, H. U. AU - Kim, S. R. AU - Hwang, J. S. PY - 2009 DA - 2009// TI - ITS2 ribosomal DNA sequence variation of the bumblebee, Bombus ardens (Hymenoptera: Apidae) JO - Genes Genomics VL - 31 UR - https://doi.org/10.1007/BF03191202 DO - 10.1007/BF03191202 ID - Oh2009 ER - TY - JOUR AU - Prada, C. AU - DeBiasse, M. B. AU - Neigel, J. E. AU - Yednock, B. AU - Stake, J. L. AU - Forsman, Z. H. PY - 2014 DA - 2014// TI - Genetic species delineation among branching Caribbean Porites corals JO - Coral Reefs VL - 33 UR - https://doi.org/10.1007/s00338-014-1179-5 DO - 10.1007/s00338-014-1179-5 ID - Prada2014 ER - TY - JOUR AU - Aguilar, C. AU - Sánchez, J. A. PY - 2007 DA - 2007// TI - Phylogenetic hypothesis of gorgoniid octocorals according to ITS2 and their predicted RNA secondary structures JO - Mol Phylogenet Evol VL - 43 UR - https://doi.org/10.1016/j.ympev.2006.11.005 DO - 10.1016/j.ympev.2006.11.005 ID - Aguilar2007 ER - TY - JOUR AU - Medina, M. AU - Weil, E. AU - Szmant, A. M. PY - 1999 DA - 1999// TI - Examination of the Montastraea annularis species complex (Cnidaria: Scleractinia) using ITS and COI sequences JO - Mar Biotechnol VL - 1 UR - https://doi.org/10.1007/PL00011756 DO - 10.1007/PL00011756 ID - Medina1999 ER - TY - JOUR AU - Kearse, M. AU - Moir, R. AU - Wilson, A. AU - Stones-Havas, S. AU - Cheung, M. AU - Sturrock, S. PY - 2012 DA - 2012// TI - Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts199 DO - 10.1093/bioinformatics/bts199 ID - Kearse2012 ER - TY - JOUR AU - Edgar, R. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Tamura, K. AU - Stecher, G. AU - Peterson, D. AU - Filipski, A. AU - Kumar, S. PY - 2013 DA - 2013// TI - MEGA6: molecular evolutionary genetics analysis version 6.0. JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mst197 DO - 10.1093/molbev/mst197 ID - Tamura2013 ER - TY - CHAP AU - Guindon, S. AU - Delsuc, F. AU - Dufayard, J. -. F. AU - Gascuel, O. ED - Posada, D. PY - 2009 DA - 2009// TI - Estimating maximum likelihood phylogenies with PhyML BT - Bioinformatics for DNA Sequence Analysis. Methods in Molecular Biology PB - Humana Press CY - New York City UR - https://doi.org/10.1007/978-1-59745-251-9_6 DO - 10.1007/978-1-59745-251-9_6 ID - Guindon2009 ER - TY - BOOK AU - Zwickl, D. J. PY - 2006 DA - 2006// TI - Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion PB - The University of Texas at Austin CY - Austin ID - Zwickl2006 ER - TY - BOOK AU - Miller, M. A. AU - Pfeiffer, W. AU - Schwartz, T. PY - 2010 DA - 2010// TI - Creating the CIPRES Science Gateway for inference of large phylogenetic trees PB - IEEE CY - New Orleans UR - https://doi.org/10.1109/GCE.2010.5676129 DO - 10.1109/GCE.2010.5676129 ID - Miller2010 ER - TY - JOUR AU - Darriba, D. AU - Taboada, G. L. AU - Doallo, R. AU - Posada, D. PY - 2012 DA - 2012// TI - jModelTest 2: more models, new heuristics and parallel computing JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.2109 DO - 10.1038/nmeth.2109 ID - Darriba2012 ER - TY - JOUR AU - Drummond, A. J. AU - Suchard, M. A. AU - Xie, D. AU - Rambaut, A. PY - 2012 DA - 2012// TI - Bayesian phylogenetics with BEAUti and the BEAST 1.7. JO - Mol Biol Evol VL - 29 UR - https://doi.org/10.1093/molbev/mss075 DO - 10.1093/molbev/mss075 ID - Drummond2012 ER - TY - STD TI - Rambaut A, Drummond AJ. Tracer v.1.4. 2007. http://beast.bio.ed.ac.uk/Tracer. Accessed Nov 2007. UR - http://beast.bio.ed.ac.uk/Tracer ID - ref83 ER - TY - JOUR AU - Kass, R. E. AU - Raftery, A. E. PY - 1995 DA - 1995// TI - Bayes Factors JO - J Am Stat Assoc VL - 90 UR - https://doi.org/10.1080/01621459.1995.10476572 DO - 10.1080/01621459.1995.10476572 ID - Kass1995 ER - TY - JOUR AU - Beerli, P. AU - Palczewski, M. PY - 2010 DA - 2010// TI - Unified framework to evaluate panmixia and migration direction among multiple sampling locations JO - Genetics VL - 185 UR - https://doi.org/10.1534/genetics.109.112532 DO - 10.1534/genetics.109.112532 ID - Beerli2010 ER - TY - JOUR AU - Leigh, J. W. AU - Bryant, D. PY - 2015 DA - 2015// TI - POPART: full-feature software for haplotype network construction JO - Methods Ecol Evol VL - 6 UR - https://doi.org/10.1111/2041-210X.12410 DO - 10.1111/2041-210X.12410 ID - Leigh2015 ER - TY - JOUR AU - Librado, P. AU - Rozas, J. PY - 2009 DA - 2009// TI - DnaSP v5: a software for comprehensive analysis of DNA polymorphism data JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp187 DO - 10.1093/bioinformatics/btp187 ID - Librado2009 ER - TY - JOUR AU - Nei, M. AU - Li, W. H. PY - 1979 DA - 1979// TI - Mathematical model for studying genetic variation in terms of restriction endonucleases JO - Proc Natl Acad Sci VL - 76 UR - https://doi.org/10.1073/pnas.76.10.5269 DO - 10.1073/pnas.76.10.5269 ID - Nei1979 ER - TY - JOUR AU - Watterson, G. A. PY - 1975 DA - 1975// TI - On the number of segregating sites in genetical models without recombination JO - Theor Popul Biol VL - 7 UR - https://doi.org/10.1016/0040-5809(75)90020-9 DO - 10.1016/0040-5809(75)90020-9 ID - Watterson1975 ER - TY - JOUR AU - Excoffier, L. AU - Smouse, P. E. AU - Quattro, J. M. PY - 1992 DA - 1992// TI - Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data JO - Genetics VL - 131 ID - Excoffier1992 ER - TY - JOUR AU - Excoffier, L. AU - Lischer, H. E. L. PY - 2010 DA - 2010// TI - Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows JO - Mol Ecol Resour VL - 10 UR - https://doi.org/10.1111/j.1755-0998.2010.02847.x DO - 10.1111/j.1755-0998.2010.02847.x ID - Excoffier2010 ER - TY - JOUR AU - Lynch, M. AU - Crease, T. J. PY - 1990 DA - 1990// TI - The analysis of population survey data on DNA sequence variation JO - Mol Biol Evol VL - 7 ID - Lynch1990 ER - TY - JOUR AU - Raymond, M. AU - Rousset, F. PY - 1995 DA - 1995// TI - An Exact Test for Population Differentiation JO - Evolution VL - 49 UR - https://doi.org/10.2307/2410454 DO - 10.2307/2410454 ID - Raymond1995 ER - TY - JOUR AU - McFadden, C. S. AU - France, S. C. AU - Sánchez, J. A. AU - Alderslade, P. PY - 2006 DA - 2006// TI - A molecular phylogenetic analysis of the Octocorallia (Cnidaria: Anthozoa) based on mitochondrial protein-coding sequences JO - Mol Phylogenet Evol VL - 41 UR - https://doi.org/10.1016/j.ympev.2006.06.010 DO - 10.1016/j.ympev.2006.06.010 ID - McFadden2006 ER - TY - JOUR AU - Hayward, B. W. PY - 1977 DA - 1977// TI - Lower Miocene corals from the Waitakere Ranges, North Auckland, New Zealand JO - J R Soc N Z VL - 7 UR - https://doi.org/10.1080/03036758.1977.10419340 DO - 10.1080/03036758.1977.10419340 ID - Hayward1977 ER - TY - JOUR AU - Ho, S. Y. W. PY - 2007 DA - 2007// TI - Calibrating molecular estimates of substitution rates and divergence times in birds JO - J Avian Biol VL - 38 UR - https://doi.org/10.1111/j.0908-8857.2007.04168.x DO - 10.1111/j.0908-8857.2007.04168.x ID - Ho2007 ER - TY - JOUR AU - Ho, S. Y. W. AU - Phillips, M. J. PY - 2009 DA - 2009// TI - Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times JO - Syst Biol VL - 58 UR - https://doi.org/10.1093/sysbio/syp035 DO - 10.1093/sysbio/syp035 ID - Ho2009 ER - TY - JOUR AU - Heath, T. A. PY - 2012 DA - 2012// TI - A hierarchical Bayesian model for calibrating estimates of species divergence times JO - Syst Biol VL - 61 UR - https://doi.org/10.1093/sysbio/sys032 DO - 10.1093/sysbio/sys032 ID - Heath2012 ER - TY - JOUR AU - Nowak, M. D. AU - Smith, A. B. AU - Simpson, C. AU - Zwickl, D. J. PY - 2013 DA - 2013// TI - A simple method for estimating informative node age priors for the fossil calibration of molecular divergence time analyses JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0066245 DO - 10.1371/journal.pone.0066245 ID - Nowak2013 ER - TY - JOUR AU - Donoghue, P. C. J. AU - Benton, M. J. PY - 2007 DA - 2007// TI - Rocks and clocks: calibrating the Tree of Life using fossils and molecules JO - Trends Ecol Evol VL - 22 UR - https://doi.org/10.1016/j.tree.2007.05.005 DO - 10.1016/j.tree.2007.05.005 ID - Donoghue2007 ER - TY - JOUR AU - Ardila, N. E. AU - Giribet, G. AU - Sánchez, J. A. PY - 2012 DA - 2012// TI - A time-calibrated molecular phylogeny of the precious corals: reconciling discrepancies in the taxonomic classification and insights into their evolutionary history JO - BMC Evol Biol VL - 12 UR - https://doi.org/10.1186/1471-2148-12-246 DO - 10.1186/1471-2148-12-246 ID - Ardila2012 ER - TY - JOUR AU - McGuire, J. A. AU - Witt, C. C. AU - Remsen, J. V. AU - Corl, A. AU - Rabosky, D. L. AU - Altshuler, D. L. PY - 2014 DA - 2014// TI - Molecular phylogenetics and the diversification of hummingbirds JO - Curr Biol VL - 24 UR - https://doi.org/10.1016/j.cub.2014.03.016 DO - 10.1016/j.cub.2014.03.016 ID - McGuire2014 ER - TY - JOUR AU - Thorne, J. L. AU - Kishino, H. PY - 2002 DA - 2002// TI - Divergence time and evolutionary rate estimation with multilocus data JO - Syst Biol VL - 51 UR - https://doi.org/10.1080/10635150290102456 DO - 10.1080/10635150290102456 ID - Thorne2002 ER - TY - JOUR AU - Wood, H. M. AU - Matzke, N. J. AU - Gillespie, R. G. AU - Griswold, C. E. PY - 2013 DA - 2013// TI - Treating fossils as terminal taxa in divergence time estimation reveals ancient vicariance patterns in the Palpimanoid spiders JO - Syst Biol VL - 62 UR - https://doi.org/10.1093/sysbio/sys092 DO - 10.1093/sysbio/sys092 ID - Wood2013 ER - TY - JOUR AU - Paradis, E. AU - Claude, J. AU - Strimmer, K. PY - 2004 DA - 2004// TI - APE: analyses of phylogenetics and evolution in R language JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg412 DO - 10.1093/bioinformatics/btg412 ID - Paradis2004 ER - TY - JOUR AU - Revell, L. J. PY - 2012 DA - 2012// TI - Phytools: An R package for phylogenetic comparative biology (and other things) JO - Methods Ecol Evol VL - 3 UR - https://doi.org/10.1111/j.2041-210X.2011.00169.x DO - 10.1111/j.2041-210X.2011.00169.x ID - Revell2012 ER - TY - JOUR AU - Harmon, L. J. AU - Weir, J. T. AU - Brock, C. D. AU - Glor, R. E. AU - Challenger, W. PY - 2008 DA - 2008// TI - GEIGER: investigating evolutionary radiations JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btm538 DO - 10.1093/bioinformatics/btm538 ID - Harmon2008 ER - TY - JOUR AU - Sokolov, S. AU - Rintoul, S. R. PY - 2009 DA - 2009// TI - Circumpolar structure and distribution of the Antarctic Circumpolar Current fronts: Variability and relationship to sea surface height JO - Journal of Geophysical Research. VL - 114 UR - https://doi.org/10.1029/2008JC005248 DO - 10.1029/2008JC005248 ID - Sokolov2009 ER -