Skip to main content

Advertisement

Table 2 Calculations of non-synonymous (d N) and synonymous (d S) substitutions for golden pheasant MHC class I genes

From: Balancing selection and recombination as evolutionary forces caused population genetic variations in golden pheasant MHC class I genes

Locus All sites PBR Non-PBR
  d N d S d N/d S d N d S d N/d S d N d S d N /d S
IA1          
-E2 3.3 (0.8) 1.7 (0.9) 1.94 3.5 (2.4) 0.9 (0.1) 3.89 3.3 (0.9) 2.0 (1.2) 1.65
-E3 7.7 (1.5) 10.6 (2.6) 0.72 12.1 (3.9) 14.1 (7.0) 0.72 6.2 (1.7) 9.6 (2.9) 0.65
IA2          
-E2 13.2 (2.4) 8.5 (2.3) 1.55 34 (9.6) 3.6 (1.8) 9.44* 8.7 (1.9) 10.5 (3.2) 0.83
-E3 10.4 (2.1) 15.0 (2.8) 0.69 19.1 (6.3) 28.8 (10.7) 0.66 7.9 (2.1) 11.4 (2.9) 0.69
  1. Notes: The d N and d S were estimated using the modified Nei–Gojobori algorithm. Distance values are given as percentages per site, with standard errors based on 1,000 bootstrap replicates (given in parentheses). * P < 0.05, as determined by performing a 1-tailed Z test