Table 3 Parameter estimates for the best fitting clines for 29 markers, including (in order from top to bottom): 12 diagnostic microsatellites, 12 anonymous microsatellites, 2 mitochondrial markers, 2 z-linked markers, and 1 autosomal marker. Geographic clines were fit using the R package HZAR. For each locus, we present the top model, estimates for cline width (w), cline center (c), pMin/pMax (allele frequencies at the end of the cline), estimates for the shape of the left, right, and mirrored tails, and the AICc
Locus | Best model | ω | c | ρmin | ρmax | deltaL | tauL | deltaR | tauR | deltaM | tauM | AICc - 15-model best fit |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Ammo001 | Pmin/Pmax fixed, no tails | 401.26 (313.01 – 532.13) | 325.42 (288.98 – 356.22) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | NA | NA | 59.40733 |
Ammo006 | Pmin/Pmanx fixed, left tail | 248.12 (142.16 – 420.99) | 349.82 (294.33 – 393.54) | 0 (fixed) | 1 (fixed) | 0.85 | 0.5 | NA | NA | NA | NA | 51.26572 |
Ammo017 | Pmin/Pmax fixed, no tails | 619.85 (469.9 – 871.3) | 229.08 (158.21 – 279.31) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | NA | NA | 38.49596 |
Ammo008 | Pmin/Pmax fixed, mirror tails | 430.16 (341.34 – 598.06) | 332.66 (292.59 – 361.66) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | 271.5 | 0.0 | 48.94506 |
Ammo027 | Pmin/Pmax fixed, right tail | 377.28 (292.21 – 511.31) | 350.59 (318.50 – 378.73) | 0 (fixed) | 1 (fixed) | NA | NA | 156.78 | 0.07 | NA | NA | 44.69117 |
Ammo015 | Pmin/Pmax fixed, no tails | 336.68 (263.38 – 441.98) | 333.40 (301.87 – 360.36) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | NA | NA | 50.7184 |
Ammo003 | Pmin/Pmax observed, no tails | 393.52 (290.96 – 557.14) | 349.81 (312.31 – 382.95) | 0 | 0.9 | NA | NA | NA | NA | NA | NA | 29.95087 |
Ammo023 | Pmin/Pmax fixed, right tail | 328.79 (260.80 – 438.51) | 336.03 (306.35 – 362.53) | 0 (fixed) | 1 (fixed) | NA | NA | 175.86 | 0.00 | NA | NA | 52.34138 |
Ammo012 | Pmin/Pmax fixed, no tails | 377.14 (294.25 – 498.37) | 331.05 (296.75 – 360.29) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | NA | NA | 38.59027 |
Ammo030 | Pmin/Pmax fixed, mirror tails | 414.72 (301.59 – 545.14) | 303.25 (266.38 – 339.25) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | 240.3 | 0.0 | 45.33692 |
Ammo036 | Pmin/Pmax fixed, no tails | 390.91 (304.64 – 517.59) | 329.39 (294.13 – 359.47) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | NA | NA | 42.29739 |
Ammo016 | Pmin/Pmax fixed, no tails | 355.08 (277.59 – 467.45) | 330.41 (297.40 – 358.50) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | NA | NA | 51.76902 |
Escu1 | Pmin/Pmax estimated, no tails | 324.79 (164.62 – 564.91) | 305.76 (236.92 – 375.68) | 0.02 | 0.71 | NA | NA | NA | NA | NA | NA | 45.11181 |
Aca01 | Pmin/Pmax fixed, no tails | 573.52 (438.09 – 794.12) | 230.56 (165.18 – 278.01) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | NA | NA | 27.04802 |
Asu18 | Pmin/Pmax estimated, no tails | 278.57 (64.34 – 676.36) | 279.66 (166.01 – 368.15) | 0.11 | 0.67 | NA | NA | NA | NA | NA | NA | 40.47708 |
Aca12 | Pmin/Pmax observed, no tails | 969.57 (607.18 – 969.99) | 313.39 (229.74 – 395.79) | 0.125 | 0.889 | NA | NA | NA | NA | NA | NA | 22.28862 |
Aca08 | Pmin/Pmax fixed, no tails | 613.14 (464.93 – 853.43) | 350.56 (303.09 – 391.63) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | NA | NA | 36.1816 |
Ammo028 | Null Model | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 30.08239 |
Ammo034 | Pmin/Pmax fixed, mirror tails | 405.81 (309.38 – 547.61) | 295.14 (254.16 – 328.33) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | 239.7 | 0.086 | 35.99985 |
Ammo002 | Pmin/Pmax observed, no tails | 327.93 (239.38 – 456.58) | 313.40 (272.38 – 346.71) | 0.109 | 1 | NA | NA | NA | NA | NA | NA | 41.30775 |
Asu15 | Pmin/Pmax fixed, mirror tails | 394.21 (295.34 – 556.81) | 330.15 (290.51 – 361.28) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | 237.2 | 0.013 | 37.69459 |
Aca05 | Pmin/Pmax observed, mirror tails | 341.90 (53.34 – 921.18) | 421.24 (357.34 – 469.42) | 0.278 | 0.929 | NA | NA | NA | NA | 87.45 | 0.002 | 18.60483 |
Ammo020 | Pmin/Pmax observed, no tails | 418.56 (291.17 – 625.28) | 333.47 (280.87 – 374.64) | 0.222 | 1 | NA | NA | NA | NA | NA | NA | 41.08943 |
Aca04 | Pmin/Pmax estimated, no tails | 37.73 (0 – 434.56) | 419.01 (337.95 – 483.85) | 0.283 | 0.454 | NA | NA | NA | NA | NA | NA | 24.34919 |
ND2 | Pmin/Pmax estimated, no tails | 264.11 (172.17 – 373.17) | 391.96 (356.44 – 430.66) | 0.129 | 0.999 | NA | NA | NA | NA | NA | NA | 80.13945 |
ND3 | Pmin/Pmax estimated, no tails | 264.11 (172.17 – 373.17) | 391.96 (356.44 – 430.66) | 0.129 | 0.999 | NA | NA | NA | NA | NA | NA | 80.13945 |
SLC45A2 | Pmin/Pmax fixed, no tails | 299.01 (233.91 – 390.53) | 322.41 (292.12 – 348.18) | 0 (fixed) | 1 (fixed) | NA | NA | NA | NA | NA | NA | 63.3274 |
SLC30A5 | Pmin/Pmax observed, no tails | 358.56 (250.63 – 527.95) | 297.83 (244.79 – 337.22) | 0.12 | 1 | NA | NA | NA | NA | NA | NA | 60.4083 |
Rag1 | Pmin/Pmax fixed, right tails | 424.55 (267.63 – 591.59) | 341.84 (287.23 – 374.29) | 0 (fixed) | 1 (fixed) | NA | NA | 169.01 | 0.14 | NA | NA | 53.77633 |