Fig. 4

Comparative analysis of UCEs, with several trees provided based on various partitioning schemes. All trees were generated with Maximum Likelihood via PHyML except F. a the complete matrix of 28 loci, (b) a tree of the 28 ‘most informative’ loci, including loci with the highest number of informative sites per locus. c a tree of 34 loci where Prosciurillus murinus and P. abstrusus were always present, (d) the tree containing 362 loci, which included at least 9 of the 11 taxa, and at least three informative sites per locus. e A tree of 2410 loci containing at least 9 of 11 taxa and at least a single informative site per locus. f ASTRAL species tree estimation, generated from the 362 loci dataset. Additional details about partitioning are found in the Methods