Table 5 Primers pairs used for amplification and sequencing
Oligo name | Oligo sequence (5' to 3') | Fragment length (bp) | Reference |
|---|---|---|---|
LD1F | AAATCAAACGAGATTCCGAGAG | 1198 | Flot et al. 2013 [50] |
LD1R | TCCATGGGGACTTCTCGTC | – | Flot et al. 2013 [50] |
LD2F | TCGACTGTTTACCAAAAACATAGC | 1519 | Flot et al. 2013 [50] |
LD2R | AAYAACCTTCCATTGCATCC | – | Flot et al. 2013 [50] |
LD3F | TAGGAGTGGTTGGGAAATCG | 2563 | Flot et al. 2013 [50] |
LD3R | CTTGGGGAAGCCAAATATGA | – | Flot et al. 2013 [50] |
LD4F | GAACAACAGGGGCAACAGAT | 2127 | Flot et al. 2013 [50] |
LD4R | ATGGTGTCCCTGAAAAGTCG | – | Flot et al. 2013 [50] |
LD5F | GCAGACGCGGTGAAACTTA | 2521 | Flot et al. 2013 [50] |
LD5R | TACCCCGGCTAAGACAACTG | – | Flot et al. 2013 [50] |
LD6F | TTGTGGGGCAAATCATTCTT | 1034 | Flot et al. 2013 [50] |
LD6R | AATGAGAAAGCCCACAAGCA | – | Flot et al. 2013 [50] |
LD7F | CAACTCCGGTTTCTGCCTTA | 3060 | Flot et al. 2013 [50] |
LD7R | TTTAAAAGAAAACTATGGAGGCCTAA | – | Flot et al. 2013 [50] |
LD8F | TTATTGGGCCTGTGTTTGGT | 1604 | Flot et al. 2013 [50] |
LD8R | CCCACATATGAAAAGGAGCAAC | – | Flot et al. 2013 [50] |
LD9F | TGGGTGCTCTTTCTTCTGGT | 1237 | Flot et al. 2013 [50] |
LD9R | AAATCCAATTGGTATATAATTTGTCA | – | Flot et al. 2013 [50] |
LD10F | ATCCCTCCTTTTGCAGGATT | 868 | Flot et al. 2013 [50] |
LD10R | CCCCAGAAGCTGTTGTGTTT | – | Flot et al. 2013 [50] |
LD11F | GGCAATTGGTTCTGGGATAA | 1254 | Flot et al. 2013 [50] |
LD11R | AAGCATACTAAAAGCCGTTCCA | – | Flot et al. 2013 [50] |
LD12F | TCTACAAACCACAAAGATATCGG | 930 | This study |
LD12R | AATCCCCGTAGGAACAGCAA | – | This study |
LD13F | GCCGGTGCTATTACAATGCT | 1892 | Flot et al. 2013 [50] |
LD13R | CAATCGATTCAAGCTCTTTTCA | – | Flot et al. 2013 [50] |
1a.PWF | CCATGTCCCACGGTTTATGT | – | This study |
1b.PWR | AGGCCCAACTAACCTTCCAT | – | This study |
2a.PWF | CATGGCGATTTCTTCTGTGA | – | This study |
2b.PWR | CCCCGTCACACTTATGATCC | – | This study |
3.PWF | GAAGCTTTTGTCATGCTTCCTT | – | This study |
4a.PWF | TGTGGAGTTTTCTCCTTGACC | – | This study |
4b.PWR | AAGCTAACGTCTCGCCTTCA | – | This study |
5a.PWF | GGTTGTGGCTTGTGGTCTTT | – | This study |
5b.PWR | GCCCTCAAGGCAAAACATAA | – | This study |
6a.PWF | ACAGTCGGGGCAAGTTTTTA | – | This study |
6b.PWR | ACCAAACACAGGCCCAATAA | – | This study |