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Table 1 Genes and sites inferred to be under positive selection using different models implemented in PAML

From: Selection on different genes with equivalent functions: the convergence story told by Hox genes along the evolution of aquatic mammalian lineages

Model Cetacea Positively selected sites Pinniped Positively selected sites Sirenia Positively selected sites
Branch model HoxB1, HoxB9, HoxD1, HoxD12 - HoxA4, HoxB9, HoxC10 - HoxA2, HoxA13, HoxB4, HoxC13 -
Branch-site model HoxB1 18, 35, 64, 147, 153, 169    HoxC13 16, 28, 200, 233
MEME HoxB1 64 HoxA7 201 HoxC13 233
BUSTED HoxB1 18, 35, 64, 128, 147, 153, 169 HoxA7 201 HoxC13 233
  1. In bold are highlighted those genes identified by all methods