Table 1 Species used and accession numbers for their genomes and target genes
From: Evolution of a global regulator: Lrp in four orders of γ-Proteobacteria
Species (abbr) | Genome | 16S rRNA | RpoB | Lrp | AsnC | RecA |
|---|---|---|---|---|---|---|
Enterobacteriales | ||||||
Citrobacter youngae (Cyo) | GG730299.1* | AB273741 | EFE05379.1 | EFE08594.1 | EFE06470.1 | EFE06891.1 |
Dickeya dadantii (Dda) | CP002038.1 | AF520707 | WP_038900031.1 | ADM98245.1 | WP_038921215.1 | WP_013319098.1 |
Escherichia coli (Eco) | NC_000913.3 | NR_102804.1 | NP_418414.1 | NP_415409.1 | NP_418199.1 | AIZ90260.1 |
Klebsiella pneumoniae (Kpn) | APVW01000146.1* | AF394537 | CDQ52107.1 | EOZ13501.1 | B5XZL3_KLEP3 | KFJ75935.1 |
Photorhabdus asymbiotica (Pas) | FM162591.1 | NR_029093.1 | CAQ82443.1 | CAQ84933.1 | KGM25900.1 | CAQ85300.1 |
Proteus mirabilis (Pmi) | Y10417.1* | KM099410.1 | KGA91942.1 | CAA71443.1 | B4F0D6_PROMH | KGY45908.1 |
Salmonella enterica Typhimurium (Sty) | NC_003197.1 | DQ344537 | AAF33499.1 | NP_459935.1 | NP_462775.1 | NP_461750.1 |
Serratia marcescens (Sma) | U02276.1* | AF124036 | KHO40608.1 | AAA75466.1 | KMJ03309.1 | WP_015670993.1 |
Yersinia enterocolitica (Yen) | CP009367.1 | NR_074308.1 | AJJ28227.1 | AJI83973.1 | AHM76528.1 | AJJ25926.1 |
Yersinia pestis (Ype) | AL590842.1 | NR_074199.1 | CAL22334.1 | CAL20027.1 | YP_002345098.1 | CAL21898.1 |
Vibrionales | ||||||
Grimontia indica (Gin) | NZ_ANFM02000022.1* | FJ943235 | EOD77459.1 | WP_002539165.1 | WP_002541578.1 | WP_002537588.1 |
Photobacterium aphoticum (Pap) | BBMN01000005.1* | X74685 | Q6LLW2.1 | GAL04870.1 | GAL07747.1 | GAL08267.1 |
Vibrio anguillarium (Van) | CP002284.1 | X71817 | CDQ49128.1 | AEH33539.1 | CDQ51588.1 | P26348.1 |
Vibrio campbelli (Vca) | JSFE01000003.1* | DQ980029 | A7MXF1.1 | KGR35110.1 | KGR34405.1 | WP_045384581.1 |
Vibrio cholerae N16961(Vch) | AE003852.1 | AE004119 | Q9KV30.2 | AAF95052.1 | NP_229730.1 | P45383.1 |
Vibrio fischeri (Vfi) | NC_006840.2 | CP000020 | YP_205797.2 | YP_204287.1 | YP_203464.1 | YP_203918.1 |
Vibrio icthyoenteri (Vic) | AFWF01000031.1* | HM771339 | EGU40820.1 | EGU46924.1 | EGU37343.1 | EGU37265.1 |
Vibrio splendidus (Vsp) | CH724173.1* | AJ515230 | WP_029224582.1 | EAP92110.1 | EAP95563.1 | WP_029225094.1 |
Vibrio variabilis (Vva) | JRWM01000006.1* | GU929924 | KHA59154.1 | KHA61343.1 | GAL25042.1 | GAL30153.1 |
Vibrio vulnificus (Vvu) | BA000037.2 | BA000037 | KFK71115.1 | BAC94085.1 | NP_932862.1 | AIL71594.1 |
Pasteurellales | ||||||
Actinobacillus succinogenes (Asu) | CP000746.1 | NR_074818.1 | A6VKC5.1 | ABR74465.1 | WP_012072259.1 | WP_011978916.1 |
Aggregatibacter actinomycetem-comitans (Aac) | NZ_CP007502.1 | CP003496 | EKX96954.1 | WP_005540269.1 | WP_005548336.1 | Q9JRP9.1 |
Avibacterium paragallinarum (Apa) | NZ_AFFP02000001.1* | AY498868 | KKB02504.1 | WP_017806582.1 | WP_017806647.1 | KKB01216.1 |
Chelonobacter oris (Cor) | NZ_JSUM01000003.1* | EU331064 | KGQ69613.1 | WP_034612909.1 | WP_034615444.1 | KGQ69536.1 |
Gallibacterium genomo (Gge) | NZ_JPXX01000021.1* | AF228015 | WP_039172822.1 | WP_039173617.1 | WP_013745649.1 | KGQ37099.1 |
Haemophilus ducreyi (Hdu) | NC_002940.2 | M63900 | Q7VKL7.1 | WP_010945324.1 | WP_041603575.1 | AAP95375.1 |
Haemophilus Influenzae (Hin) | JFZK01000018.1 | M35019 | AJO91604.1 | KAI97579.1 | WP_005649540.1 | AJO91526.1 |
Mannheimia haemolytica (Mha) | NZ_CP006957.1 | NR_102832.1 | AKA12987.1 | WP_006251058.1 | WP_006248981.1 | AAD53288.1 |
Necropsobacter rosorum (Nro) | NZ_CCMQ01000006.1* | NR_114428.1 | WP_032093555.1 | WP_032092886.1 | WP_032093497.1 | WP_032093315.1 |
Pasteurella multocida (Pmu) | NZ_CP008918.1 | NR_103916.1 | AAK03821.1 | WP_005721107.1 | WP_005718316.1 | P95526.1 |
Alteromonadales | ||||||
Ferrimonas futtsuensis (Ffu) | NZ_KE383896.1 | AB245515 | WP_028110712.1 | WP_028108266.1 | WP_028110962.1 | WP_028109920.1 |
Ferrimonas senticii (Fse) | NZ_AUGM01000029 | DQ778094 | WP_028117235.1 | WP_028115272.1 | WP_028117739.1 | WP_028117049.1 |
Idiomarina sp. A28L (Isp) | AFPO01000011.1* | FJ404759 | EGN75162.1 | EGN75753.1 | WP_007420625.1 | EGN75701.1 |
Moritella dasanensis (Mda) | NZ_AKXQ01000041.1* | EF192283.1 | WP_017222504.1 | WP_017223704.1 | WP_017222470.1 | WP_017221889.1 |
Pseudoalteromonas luteoviolacea (Plu) | NZ_AUSV01000032.1* | X82144 | KID54553.1 | WP_023398863.1 | WP_023399751.1 | ESP93629.1 |
Pseudoalteromonas tunicata (Ptu) | NZ_CH959301.1* | DQ005908 | EAR26370.1 | WP_009839786.1 | WP_009840643.1 | WP_009837615.1 |
Psychromonas aquimarina (Paq) | NC_008709.1 | AB304805 | WP_028863208.1 | WP_011771837.1 | WP_028864437.1 | WP_028864512.1 |
Shewanella frigidimarina (Sfr) | NC_008345.1 | NR_074814.1 | WP_011635633 | WP_011637260.1 | WP_011636002.1 | Q086A0.1 |
Shewanella loihica (Slo) | CP000606.1 | NR_074815.1 | ABO22023.1 | ABO23891.1 | WP_014609941.1 | ABO23085.1 |
Shewanella pealeana (Spe) | NC_009901.1 | NR_074821.1 | A8GYW9.1 | WP_012155470.1 | WP_012154000.1 | ABV86522.1 |