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Table 1 Species used and accession numbers for their genomes and target genes

From: Evolution of a global regulator: Lrp in four orders of γ-Proteobacteria

Species (abbr) Genome 16S rRNA RpoB Lrp AsnC RecA
Enterobacteriales       
 Citrobacter youngae (Cyo) GG730299.1* AB273741 EFE05379.1 EFE08594.1 EFE06470.1 EFE06891.1
 Dickeya dadantii (Dda) CP002038.1 AF520707 WP_038900031.1 ADM98245.1 WP_038921215.1 WP_013319098.1
 Escherichia coli (Eco) NC_000913.3 NR_102804.1 NP_418414.1 NP_415409.1 NP_418199.1 AIZ90260.1
 Klebsiella pneumoniae (Kpn) APVW01000146.1* AF394537 CDQ52107.1 EOZ13501.1 B5XZL3_KLEP3 KFJ75935.1
 Photorhabdus asymbiotica (Pas) FM162591.1 NR_029093.1 CAQ82443.1 CAQ84933.1 KGM25900.1 CAQ85300.1
 Proteus mirabilis (Pmi) Y10417.1* KM099410.1 KGA91942.1 CAA71443.1 B4F0D6_PROMH KGY45908.1
 Salmonella enterica Typhimurium (Sty) NC_003197.1 DQ344537 AAF33499.1 NP_459935.1 NP_462775.1 NP_461750.1
 Serratia marcescens (Sma) U02276.1* AF124036 KHO40608.1 AAA75466.1 KMJ03309.1 WP_015670993.1
 Yersinia enterocolitica (Yen) CP009367.1 NR_074308.1 AJJ28227.1 AJI83973.1 AHM76528.1 AJJ25926.1
 Yersinia pestis (Ype) AL590842.1 NR_074199.1 CAL22334.1 CAL20027.1 YP_002345098.1 CAL21898.1
Vibrionales       
 Grimontia indica (Gin) NZ_ANFM02000022.1* FJ943235 EOD77459.1 WP_002539165.1 WP_002541578.1 WP_002537588.1
 Photobacterium aphoticum (Pap) BBMN01000005.1* X74685 Q6LLW2.1 GAL04870.1 GAL07747.1 GAL08267.1
 Vibrio anguillarium (Van) CP002284.1 X71817 CDQ49128.1 AEH33539.1 CDQ51588.1 P26348.1
 Vibrio campbelli (Vca) JSFE01000003.1* DQ980029 A7MXF1.1 KGR35110.1 KGR34405.1 WP_045384581.1
 Vibrio cholerae N16961(Vch) AE003852.1 AE004119 Q9KV30.2 AAF95052.1 NP_229730.1 P45383.1
 Vibrio fischeri (Vfi) NC_006840.2 CP000020 YP_205797.2 YP_204287.1 YP_203464.1 YP_203918.1
 Vibrio icthyoenteri (Vic) AFWF01000031.1* HM771339 EGU40820.1 EGU46924.1 EGU37343.1 EGU37265.1
 Vibrio splendidus (Vsp) CH724173.1* AJ515230 WP_029224582.1 EAP92110.1 EAP95563.1 WP_029225094.1
 Vibrio variabilis (Vva) JRWM01000006.1* GU929924 KHA59154.1 KHA61343.1 GAL25042.1 GAL30153.1
 Vibrio vulnificus (Vvu) BA000037.2 BA000037 KFK71115.1 BAC94085.1 NP_932862.1 AIL71594.1
Pasteurellales       
 Actinobacillus succinogenes (Asu) CP000746.1 NR_074818.1 A6VKC5.1 ABR74465.1 WP_012072259.1 WP_011978916.1
 Aggregatibacter actinomycetem-comitans (Aac) NZ_CP007502.1 CP003496 EKX96954.1 WP_005540269.1 WP_005548336.1 Q9JRP9.1
 Avibacterium paragallinarum (Apa) NZ_AFFP02000001.1* AY498868 KKB02504.1 WP_017806582.1 WP_017806647.1 KKB01216.1
 Chelonobacter oris (Cor) NZ_JSUM01000003.1* EU331064 KGQ69613.1 WP_034612909.1 WP_034615444.1 KGQ69536.1
 Gallibacterium genomo (Gge) NZ_JPXX01000021.1* AF228015 WP_039172822.1 WP_039173617.1 WP_013745649.1 KGQ37099.1
 Haemophilus ducreyi (Hdu) NC_002940.2 M63900 Q7VKL7.1 WP_010945324.1 WP_041603575.1 AAP95375.1
 Haemophilus Influenzae (Hin) JFZK01000018.1 M35019 AJO91604.1 KAI97579.1 WP_005649540.1 AJO91526.1
 Mannheimia haemolytica (Mha) NZ_CP006957.1 NR_102832.1 AKA12987.1 WP_006251058.1 WP_006248981.1 AAD53288.1
 Necropsobacter rosorum (Nro) NZ_CCMQ01000006.1* NR_114428.1 WP_032093555.1 WP_032092886.1 WP_032093497.1 WP_032093315.1
 Pasteurella multocida (Pmu) NZ_CP008918.1 NR_103916.1 AAK03821.1 WP_005721107.1 WP_005718316.1 P95526.1
Alteromonadales       
 Ferrimonas futtsuensis (Ffu) NZ_KE383896.1 AB245515 WP_028110712.1 WP_028108266.1 WP_028110962.1 WP_028109920.1
 Ferrimonas senticii (Fse) NZ_AUGM01000029 DQ778094 WP_028117235.1 WP_028115272.1 WP_028117739.1 WP_028117049.1
 Idiomarina sp. A28L (Isp) AFPO01000011.1* FJ404759 EGN75162.1 EGN75753.1 WP_007420625.1 EGN75701.1
 Moritella dasanensis (Mda) NZ_AKXQ01000041.1* EF192283.1 WP_017222504.1 WP_017223704.1 WP_017222470.1 WP_017221889.1
 Pseudoalteromonas luteoviolacea (Plu) NZ_AUSV01000032.1* X82144 KID54553.1 WP_023398863.1 WP_023399751.1 ESP93629.1
 Pseudoalteromonas tunicata (Ptu) NZ_CH959301.1* DQ005908 EAR26370.1 WP_009839786.1 WP_009840643.1 WP_009837615.1
 Psychromonas aquimarina (Paq) NC_008709.1 AB304805 WP_028863208.1 WP_011771837.1 WP_028864437.1 WP_028864512.1
 Shewanella frigidimarina (Sfr) NC_008345.1 NR_074814.1 WP_011635633 WP_011637260.1 WP_011636002.1 Q086A0.1
 Shewanella loihica (Slo) CP000606.1 NR_074815.1 ABO22023.1 ABO23891.1 WP_014609941.1 ABO23085.1
 Shewanella pealeana (Spe) NC_009901.1 NR_074821.1 A8GYW9.1 WP_012155470.1 WP_012154000.1 ABV86522.1
  1. *contigs and/or full genome were not available at time of writing