From: Chloroplast genomes as a tool to resolve red algal phylogenies: a case study in the Nemaliales
Family | Species | Acession # | Specimen ID | Origin | Genome size (BP) | GC% | Protein coding genes | ORFs | tRNA | tmRNA | rRNA | ncRNA | introns |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Scinaiaceae | Nothogenia fastigiata | SAMEA4358435 | J.0141 | Chile | 182 457 | 33.0 | 193 | 8 | 30 | 1 | 3 | 1 | 2 |
Scinaia undulata | SAMEA4478602 | J.0081 | Chile | 183 795 | 35.9 | 197 | 9 | 31 | 1 | 3 | 1 | 2 | |
Galaxauraceae | Actinotrichia fragilis | SAMEA4357171 | HV04073 | Philippines | 183 324 | 29.8 | 197 | 9 | 31 | 1 | 3 | 1 | 2 |
Galaxaura rugosa | SAMEA4357173 | JFC0074 | Australia | 181 215 | 29.6 | 197 | 7 | 31 | 1 | 3 | 1 | 2 | |
Tricleocarpa cylindrica | SAMEA4478608 | J.0145 | Costa Rica | ≥150 119 | - | ≥149 | ≥8 | ≥25 | ≥1 | ≥1 | ≥1 | ≥0 | |
Dichotomaria marginata | SAMEA4357172 | HV04060 | Philippines | 184 395 | 28.8 | 197 | 11 | 31 | 1 | 3 | 1 | 2 | |
Liagoraceae | Liagora brachyclada | SAMEA4395348 | J.0126 | Chile | 182 937 | 33.7 | 195 | 9 | 31 | 1 | 3 | 1 | 2 |
Liagora harveyana | SAMEA4358432 | J.0237 | Chile | 182 933 | 33.9 | 195 | 10 | 31 | 1 | 3 | 1 | 2 | |
Izziella formosana | SAMEA4358392 | J.0158 | Costa Rica | 183 248 | 35.0 | 195 | 9 | 31 | 1 | 3 | 1 | 2 | |
Neoizziella asiatica | SAMEA4358434 | J.0154 | Costa Rica | 183 313 | 33.4 | 195 | 10 | 31 | 1 | 3 | 1 | 2 | |
Titanophycus setchellii | SAMEA4478603 | J.0604 | Japan | ≥183 356 | - | 195 | ≥9 | ≥31 | ≥1 | ≥3 | ≥1 | ≥2 | |
Helminthora furcellata | SAMEA4393237 | J.0165 | South Africa | 184 585 | 32.1 | 195 | 8 | 31 | 1 | 3 | 1 | 2 | |
Trichogloeopsis pedicellata | SAMEA4358437 | C.0024 | French West Indies | 183 497 | 31.9 | 194 | 8 | 31 | 1 | 3 | 1 | 2 | |
Hommersandiophycus borowitzkae | SAMEA4358391 | HV00480 | Jamaica | 184 728 | 32.2 | 194 | 9 | 31 | 1 | 3 | 1 | 2 | |
Dermonema virens | SAMEA4357169 | J.0258 | Taiwan | 184 997 | 34.1 | 195 | 9 | 31 | 1 | 3 | 1 | 2 | |
Helminthocladia australis | SAMEA4358292 | J.0167 | South Africa | 185 694 | 32.8 | 195 | 9 | 31 | 1 | 3 | 1 | 2 | |
Yamadallaceae | Yamadaella caenomyce | SAMEA4358436 | J.0255 | Chile | 182 460 | 35.9 | 194 | 9 | 31 | 1 | 3 | 1 | 2 |
Liagoropsidaceae | Liagoropsis maxima | SAMEA4358433 | J.0256 | Taiwan | 189 564 | 32.1 | 195 | 11 | 31 | 1 | 3 | 1 | 2 |
Nemaliaceae | Nemalion sp. | SAMEA4478604 | H.1444 | Italy | 182 930 | 35.5 | 194 | 7 | 31 | 1 | 3 | 1 | 2 |
Palmariaceae | Palmaria palmata | SAMEA4478605 | ODC1024 | France | ≥187 103 | - | ≥196 | ≥11 | ≥31 | ≥1 | ≥3 | ≥1 | ≥2 |
Rhodothamniellaceae | Rhodothamniella floridula | SAMEA4478606 | HEC15602 | France | ≥182 494 | - | ≥196 | ≥9 | ≥29 | ≥1 | ≥1 | ≥1 | ≥2 |
Acrochaetiaceae | Acrochaetium secundatum | SAMEA4393238 | FS1067 | Bulgaria | ≥183541 | - | ≥196 | ≥12 | ≥29 | ≥1 | ≥0 | ≥1 | ≥2 |