Skip to main content

Advertisement

Table 3 Summary statistics of diversity and differentiation for mitochondrial and nuclear genes

From: Comparative Phylogeography of Ethiopian anurans: impact of the Great Rift Valley and Pleistocene climate change

Ametia sp.
  ND2 Rag-1 Tyr BDNF     
West East West East West East West East     
 N 12 19 14 28 22 32 24 26     
 S 13 24 2 2 3 3 1 1     
 Π 0.239 0.399 0.085 0.105 0.108 0.074 0.07 0.026     
 θ 0.447 0.715 0.08 0.065 0.152 0.138 0.048 0.047     
 Tajima’s D −0.213 −1.723 0.179 1.268 −0.749 −1.079 −0.741 0.363     
 Fu’s F 1.885 0.297 1.475 0.987 −0.271 −1.225 −0.381 0.394     
F st 0.761 0.449 0.646 0.176     
Ptychadena cooperi
  COI CXCR4 NCX1 Rag-1 Tyr   
West East West East West East West East West East   
 N 21 10 60 26 62 22 62 16 62 24   
 S 3 15 4 2 4 1 3 1 2 5   
 Π 0.182 2.518 0.143 0.065 0.033 0.016 0.031 0.049 0.158 0.464   
 θ 0.339 1.907 0.192 0.117 0.150 0.048 0.152 0.119 0.129 0.405   
 Tajima’s D −1.217 1.475 −0.558 −0.960 −1.684 −1.162 −1.576 −1.162 0.381 0.427   
 Fu’s F −1.770 9.345 −1.176 −1.046 −2.975 −0.957 −3.984 −0.700 0.591 −1.672   
F st 0.478 0.712 0.001 0.942 0.275   
Ptychadena cf.neumanni 2
  COI CXCR4 NCX1 Rag-1 Tyr   
West East West East West East West East West East   
 N 36 24 80 62 76 54 64 60 78 62   
 S 8 9 3 7 3 5 7 14 3 10   
 Π 0.307 0.447 0.032 0.111 0.064 0.667 0.196 0.865 0.320 1.006   
 θ 0.694 0.867 0.135 0.381 0.102 0.193 0.327 0.629 0.216 0.710   
 Tajima’s D −1.625 −1.588 −1.416 −1.859 −0.708 −1.533 −1.014 1.103 0.910 1.150   
 Fu’s F −1.896 −3.562 0.021 −4.412 −1.185 −5.661 −0.230 1.386 −0.011 −1.157   
F st 0.793 0.039 0.016 0.274 0.555   
Leptopelis gramineus
  COI Rag-2 NCX1 Rag-1 Tyr BDNF
West East West East West East West East West East West East
 N 9 16 18 50 18 48 18 50 18 40 18 50
 S 18 68 4 23 1 10 8 19 7 15 3 5
 Π 1.275 4.118 0.252 0.463 0.02 0.269 0.279 0.361 0.353 0.511 0.149 0.121
 θ 1.299 4.195 0.205 1.019 0.053 0.407 0.333 0.605 0.458 0.851 0.19 0.279
 Tajima’s D (East = Arsi) −0.267 −0.585 0.676 −1.232 −1.165 −1.524* −0.565 −1.209 −1.042 −0.278 −0.591 −0.964
 Fu’s F (East = Arsi) −2.843 −1.987 −0.362 −4.967* −0.794 −2.113 0.444 −4.455* −1.584 −5.203* −0.964 −2.707*
F st 0.537 0.125 0.077 0.561 0.353 0.008
Ptychadena erlangeri
  COI CXCR4 NCX1 Rag-1 Tyr   
West East West East West East West East West East   
 N 28 8 68 20 60 18 68 16 70 16   
 S 40 7 15 5 7 0 15 11 29 11   
 Π 2.024 0.503 0.366 0.269 0.104 NA 0.493 0.625 1.261 0.743   
 θ 3.790 0.690 0.794 0.38 0.266 NA 0.690 0.695 2.048 0.730   
 Tajima’s D −1.740 −1.309 −1.634 −0.965 −1.561 NA −0.832 −0.378 −1.221 0.068   
 Fu’s F −0.039 −2.317 −12.096 −2.94 −5.153 NA −5.004 −1.501 −27.296 −1.120   
F st 0.029 0.055 0.032 0.029 0.109   
Ptychadena cf. neumanni 1
  COI CXCR4 NCX1 Rag-1 Tyr   
West East West East West East West East West East   
 N 49   126   114   118   122    
 S 8   9   5   12   20    
 Π 0.322   0.253   0.121   0.264   0.859    
 θ 0.645   0.372   0.166   0.575   1.348    
 Tajima’s D −1.371   −0.775   −0.567   −1.426   −1.024    
 Fu’s F 1.073   −2.142   −2.409   −6.391   −12.296    
Tomopterna kachowskii
  COI SLC8A3 NCX1 Rag-1 BDNF   
West East West East West East West East West East   
 N 21 15 50 30 44 30 46 28 42 30   
 S 16 22 5 2 9 9 8 6 4 3   
 Π 1.062 1.135 0.151 0.042 0.231 0.193 0.454 0.358 0.215 0.214   
 Θ 0.884 1.401 0.299 0.109 0.448 0.287 0.462 0.325 0.204 0.168   
 Tajima’s D −1.257 −2.176 * −1.2006 −1.2555 −1.3893 −1.0164 −0.053 0.2998 0.1256 0.6543   
 Fu’s F 0.358 −0.697 −1.661 −1.021 −0.976 −1.142 −3.341 −1.995 0.003 1.002   
F st −0.017 0.109 0.001 −0.028 −0.015   
  1. N number of individuals, S number of SNPs, Π nucleotide diversity, θ Waterson’s estimator of diversity. Values of Tajima’s D and Fu’s F that are significantly different from 0 are indicated with *