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Table 2 Molecular diversity indices of the twelve loci examined across ten populations

From: Population subdivision of hydrothermal vent polychaete Alvinella pompejana across equatorial and Easter Microplate boundaries

Parameter

23N

21N

13N

9N

11S

14S

17S

18S

32S

38S

Total

Protein-coding loci

  mtCOI (N)a

9

8

5

9

9

3

5

11

10

8

77

   k

19

14

10

18

4

1

4

4

2

1

39

   h

7

6

4

9

5

2

5

4

3

2

31

   H d

0.92

0.93

0.90

1.00

0.72

0.67

1.00

0.49

0.64

0.54

0.87

   π

0.0138

0.0114

0.0078

0.0114

0.0017

0.0013

0.0031

0.0014

0.0015

0.0010

0.0099

  SAHH (N)

18

18

10

18

18

6

10

22

20

16

156

   k

3

3

2

5

4

2

2

4

5

3

8

   h

9

4

3

5

4

2

2

3

4

3

8

   H d

0.31

0.40

0.51

0.48

0.47

0.33

0.53

0.26

0.44

0.58

0.44

   π

0.0013

0.0013

0.0014

0.0016

0.0022

0.0017

0.0027

0.0013

0.0023

0.0029

0.0020

  GlobX (N)

16

16

8

16

16

4

10

22

20

16

144

   K

8

8

3

10

4

4

7

7

6

4

16

   h

6

6

4

9

3

3

4

5

3

3

14

   H d

0.83

0.81

0.75

0.91

0.58

0.83

0.53

0.76

0.57

0.34

0.84

   π

0.0045

0.0041

0.0029

0.0057

0.0041

0.0060

0.0046

0.0071

0.0063

0.0031

0.0069

  PGM (N)

12

16

10

12

18

6

10

20

20

16

140

   k

9

10

7

5

0

3

3

2

4

7

16

   h

5

5

4

2

1

3

2

2

3

4

11

   H d

0.58

0.73

0.53

0.30

0.00

0.60

0.20

0.39

0.53

0.68

0.79

   π

0.0073

0.0079

0.0057

0.0046

0.0000

0.0043

0.0018

0.0024

0.0030

0.0065

0.0073

Non-coding loci

  AP_NC1 (N)

18

16

10

16

18

6

10

22

20

16

152

   k

9

9

8

9

1

1

2

1

1

0

14

   h

6

5

6

7

2

2

3

2

2

1

15

   H d

0.68

0.61

0.84

0.69

0.21

0.33

0.38

0.09

0.19

0.00

0.41

   π

0.0088

0.0082

0.0101

0.0090

0.0006

0.0009

0.0011

0.0002

0.0005

0.0000

0.0046

  AP_NC3 (N)

18

18

10

18

18

6

8

22

20

16

154

   k

3

3

6

6

8

2

3

2

9

11

17

   h

4

4

6

7

5

3

4

3

9

6

19

   H d

0.66

0.66

0.84

0.76

0.82

0.73

0.82

0.68

0.89

0.73

0.82

   π

0.0022

0.0022

0.0043

0.0032

0.0064

0.0030

0.0032

0.0023

0.0106

0.0097

0.0077

  AP_NC8 (N)

16

14

10

14

16

6

10

18

20

16

140

   k

6

7

5

2

10

8

8

9

4

4

16

   h

9

9

6

3

6

4

4

6

5

4

22

   H d

0.88

0.91

0.84

0.58

0.85

0.80

0.64

0.77

0.74

0.74

0.84

   π

0.0056

0.0061

0.0051

0.0018

0.0091

0.0087

0.0084

0.0089

0.0048

0.0038

0.0075

  AP_NC20 (N)

18

18

10

16

18

6

8

22

20

16

152

   k

6

9

4

10

5

7

5

8

7

7

17

   h

7

8

4

10

5

4

4

10

5

4

23

   H d

0.86

0.83

0.82

0.92

0.56

0.80

0.82

0.66

0.76

0.44

0.85

   π

0.0056

0.0063

0.0046

0.0066

0.0036

0.0074

0.0068

0.0044

0.0046

0.0031

0.0056

  AP_NC22 (N)

16

14

10

18

18

4

8

22

18

16

144

   k

4

6

4

3

5

3

1

3

3

3

15

   h

6

8

4

4

6

4

2

4

4

4

17

   H d

0.82

0.89

0.73

0.68

0.68

1.00

0.54

0.77

0.71

0.68

0.87

   π

0.0042

0.0045

0.0045

0.0032

0.0044

0.0047

0.0015

0.0038

0.0025

0.0023

0.0051

  AP_NC28 (N)

18

16

10

16

18

6

10

22

20

16

152

   k

5

5

7

5

4

4

5

6

6

7

8

   h

6

8

6

6

5

3

4

7

4

6

13

   H d

0.75

0.84

0.89

0.82

0.61

0.73

0.78

0.77

0.71

0.83

0.84

   π

0.0035

0.0046

0.0059

0.0052

0.0038

0.0057

0.0048

0.0046

0.0072

0.0078

0.0059

  AP_NC32 (N)

16

16

8

18

18

6

10

20

16

16

144

   k

2

6

6

12

21

4

17

16

16

1

32

   h

3

6

5

10

7

3

4

3

2

2

21

   H d

0.58

0.80

0.86

0.93

0.88

0.60

0.78

0.61

0.13

0.13

0.84

   π

0.0017

0.0034

0.0067

0.0079

0.0140

0.0053

0.0218

0.0223

0.0055

0.0003

0.0130

  AP_NC43 (N)

18

18

10

18

18

6

8

22

16

14

148

   k

3

1

3

3

0

0

1

1

0

0

8

   h

4

2

4

4

1

1

2

2

1

1

9

   H d

0.31

0.11

0.53

0.31

0.00

0.00

0.25

0.25

0.00

0.00

0.46

   π

0.0009

0.0003

0.0017

0.0009

0.0000

0.0000

0.0007

0.0007

0.0000

0.0000

0.0014

Totals

 Haplotypes (h)

72

71

56

76

50

34

40

51

45

40

 

 Singletons (S)

10

14

8

17

5

1

6

7

6

6

 

 Mean H d

0.68

0.71

0.76

0.70

0.53

0.62

0.61

0.54

0.53

0.47

 

 Richnessb

2.21

2.29

2.36

2.27

1.93

2.08

2.05

1.92

1.90

1.80

 

 Privatesc

0.95

1.06

1.19

0.95

0.50

0.40

0.60

0.34

0.47

0.46

 
  1. a N = number of sequences; k, number of polymorphic sites; h, number of haplotypes; H d , haplotype diversity; and π, nucleotide diversity
  2. b Rarefaction estimates of mean allelic richness for twelve loci based on minimum sample size of 3
  3. c Rarefaction estimates of mean private allelic richness for twelve loci based on minimum sample size of 3