Skip to main content

Advertisement

Table 1 Percent similarity (below diagonal) and RMSD (above diagonal) of scallop (Air) and squid (Tpa) proteins

From: Structural differences and differential expression among rhabdomeric opsins reveal functional change after gene duplication in the bay scallop, Argopecten irradians (Pectinidae)

  Air-OPNGq1 Air-OPNGq2 Air-OPNGq3 Air-OPNGq4 Tpa-OPNGq1
Air-OPNGq1 - 0.378b 0.354 0.489 0.589
Air-OPNGq2 74.7 (78.9) a - 0.408 0.603 0.503
Air-OPNGq3 74.7 (77.9) 80.9 (92.6) c - 0.699 0.601
Air-OPNGq4 72.9 (76.9) 76.9 (85.6) 74.6 (88.1) - 0.549
Tpa-OPNGq1 71.0 (72.4) 73.4 (73.8) 75.2 (75.8) 73.3 (74.7) -
  1. a Percent similarity of amino acid sequence alignments from first methionine to stop codons; values in parentheses are percent identity from Helix 1 through Helix 7
  2. b Atomic values in angstroms, where the lower the RMSD value, the higher is the similarity between structures
  3. c Numbers in bold indicate minimum and maximum values