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Table 1 TEV-eGFP mutations shared in the different hosts

From: High virulence does not necessarily impede viral adaptation to a new host: a case study using a plant RNA virus

    N. benthamiana D. stramonium N. tabacum
Nucleotide change Amino acid change Gene Number of lineages Frequency range Number of lineages Frequency range Number of lineages Frequency range
U6286C Y2096H CI 6/6 0.013 – 0.131 2/10 0.012 – 0.031 4/10 0.019 – 0.140
A208G M70V P1 1/6 0.012 1/10 0.010 - -
C1039U H347Y P1 1/6 0.013 1/10 0.035 - -
G1332A M444I eGFP 1/6 0.176 1/10 0.139 - -
U1556Ga V519G eGFP 1/6 0.011 6/10 0.010 – 0.016 - -
U1836G synonymous HC-Pro 5/6 0.093 – 0.108 1/10 0.089 - -
A1917G synonymous HC-Pro 1/6 0.015 1/10 0.017 - -
A6278G E2093G CI 1/6 0.012 2/10 0.014 – 0.031 - -
C6547U H2183Y VPg 1/6 0.013 1/10 0.014 - -
U6747C synonymous VPg 1/6 0.012 1/10 0.110 - -
A6776G D2259G VPg 2/6 0.533 – 0.746 1/10 0.023 - -
G6803A S2268N VPg 1/6 0.014 1/10 0.024 - -
A6438G synonymous 6 K2 1/6 0.012 1/10 0.024 - -
C8405Ga T2802R NIb 5/6 0.010 – 0.018 5/10 0.010 – 0.016 - -
U9474C synonymous CP 1/6 0.013 1/10 0.061 - -
C9837U synonymous CP 1/6 0.070 1/10 0.010 - -
U3803C I1268T P3 2/6 0.656 – 0.881 - - 2/10 0.010 – 0.019
U3872C V2191A P3 1/6 0.064 - - 1/10 0.016
G4411A V1471I CI 1/6 0.030 - - 1/10 0.016
C4989U synonymous CI 1/6 0.018 - - 1/10 0.066
C548U T183I P1 - - 1/10 0.011 1/10 0.024
G2928Aa synonymous HC-Pro - - 1/10 0.017 1/10 0.999
U7092Ca synonymous NIa-Pro - - 10/10 0.091 – 0.755 2/10 0.176 – 0.999
A7479Ca synonymous NIa-Pro - - 10/10 0.132 – 0.790 7/10 0.960 – 0.999
A7567G K2523E NIa-Pro - - 4/10 0.012 – 0.053 10/10 0.015 – 0.871
G7710A synonymous NIa-Pro - - 1/10 0.014 1/10 0.024
A8253Ca synonymous NIb - - 10/10 0.136 – 0.801 7/10 0.805 – 0.998
G9117A synonymous NIb - - 1/10 0.321 2/10 0.022 – 0.025
U9249C synonymous NIb - - 2/10 0.011 – 0.231 1/10 0.040
  1. aAlso detected in the ancestral population