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Table 1 TEV-eGFP mutations shared in the different hosts

From: High virulence does not necessarily impede viral adaptation to a new host: a case study using a plant RNA virus

   

N. benthamiana

D. stramonium

N. tabacum

Nucleotide change

Amino acid change

Gene

Number of lineages

Frequency range

Number of lineages

Frequency range

Number of lineages

Frequency range

U6286C

Y2096H

CI

6/6

0.013 – 0.131

2/10

0.012 – 0.031

4/10

0.019 – 0.140

A208G

M70V

P1

1/6

0.012

1/10

0.010

-

-

C1039U

H347Y

P1

1/6

0.013

1/10

0.035

-

-

G1332A

M444I

eGFP

1/6

0.176

1/10

0.139

-

-

U1556Ga

V519G

eGFP

1/6

0.011

6/10

0.010 – 0.016

-

-

U1836G

synonymous

HC-Pro

5/6

0.093 – 0.108

1/10

0.089

-

-

A1917G

synonymous

HC-Pro

1/6

0.015

1/10

0.017

-

-

A6278G

E2093G

CI

1/6

0.012

2/10

0.014 – 0.031

-

-

C6547U

H2183Y

VPg

1/6

0.013

1/10

0.014

-

-

U6747C

synonymous

VPg

1/6

0.012

1/10

0.110

-

-

A6776G

D2259G

VPg

2/6

0.533 – 0.746

1/10

0.023

-

-

G6803A

S2268N

VPg

1/6

0.014

1/10

0.024

-

-

A6438G

synonymous

6 K2

1/6

0.012

1/10

0.024

-

-

C8405Ga

T2802R

NIb

5/6

0.010 – 0.018

5/10

0.010 – 0.016

-

-

U9474C

synonymous

CP

1/6

0.013

1/10

0.061

-

-

C9837U

synonymous

CP

1/6

0.070

1/10

0.010

-

-

U3803C

I1268T

P3

2/6

0.656 – 0.881

-

-

2/10

0.010 – 0.019

U3872C

V2191A

P3

1/6

0.064

-

-

1/10

0.016

G4411A

V1471I

CI

1/6

0.030

-

-

1/10

0.016

C4989U

synonymous

CI

1/6

0.018

-

-

1/10

0.066

C548U

T183I

P1

-

-

1/10

0.011

1/10

0.024

G2928Aa

synonymous

HC-Pro

-

-

1/10

0.017

1/10

0.999

U7092Ca

synonymous

NIa-Pro

-

-

10/10

0.091 – 0.755

2/10

0.176 – 0.999

A7479Ca

synonymous

NIa-Pro

-

-

10/10

0.132 – 0.790

7/10

0.960 – 0.999

A7567G

K2523E

NIa-Pro

-

-

4/10

0.012 – 0.053

10/10

0.015 – 0.871

G7710A

synonymous

NIa-Pro

-

-

1/10

0.014

1/10

0.024

A8253Ca

synonymous

NIb

-

-

10/10

0.136 – 0.801

7/10

0.805 – 0.998

G9117A

synonymous

NIb

-

-

1/10

0.321

2/10

0.022 – 0.025

U9249C

synonymous

NIb

-

-

2/10

0.011 – 0.231

1/10

0.040

  1. aAlso detected in the ancestral population