Retention of duplicated long-wavelength opsins in mosquito lineages by positive selection and differential expression

Giraldo-Calderón, Gloria I.; Zanis, Michael J.; Hill, Catherine A.

doi:10.1186/s12862-017-0910-6

Table 1 Summary of Ae. aegypti, An. gambiae and Cx. quinquefasciatus opsin genes

From: Retention of duplicated long-wavelength opsins in mosquito lineages by positive selection and differential expression

Gene^a	NCBI accession no.	VectorBase gene ID	Supercontig or Scaffold	Base pair range on Supercontig/Scaffold	No. amino acids	No. exons	Expression evidence (transcript, peptide)^b	Predicted wavelength sensitivity range
Ae. aegypti
AaGPRop1	XM_001651947.2	AAEL006498	1.208	1,715,269–1,716,390	373	1	t, -	Long
AaGPRop2	XM_001657569.2	AAEL006259	1.197	948,069–949,187	372	1	t, -	Long
AaGPRop3	XM_001651948.2	AAEL006484	1.208	1,726,735–1,727,928	373	2	t, -	Long
AaGPRop4	XM_001651116.2	AAEL005621	1.165	1,775,297–1,776,430	377	1	t, -	Long
AaGPRop5	XM_001651117.2	AAEL005625	1.165	1,782,454–1,783,587	377	1	t, -	Long
AaGPRop7	XM_001652675.2	AAEL007389	1.252	485,115–486,311	379	2	t, -	Long
AaGPRop8	XM_001653816.2	AAEL009615	1.412	271,590–320,188	381	5	t, -	Ultraviolet
AaGPRop9_1	XM_001662932.2	AAEL003035	1.75	1,344,859–1,358,612	380	2	t, -	Short
AaGPRop9_2 ^c	XM_011494686.1	AAEL003035	1.9	1,914,223–1,914,456	77	1	N.A.	N.A.
AaGPRop10	XM_001650694.1	AAEL005322	1.151	1,763,069–1,943,586	502	3	t, -	Rh7-like
AaGPRop12	XM_001650752.2	AAEL005373	1.153	1,048,301–1,134,510	412	5	t, -	Pteropsin
An. gambiae
AgGPRop1	XM_003435715.1	AGAP013149	AAAB01008987	15,485,448–15,486,560	370	1	t, p	Long
AgGPRop3	XM_003435710.1	AGAP012985	AAAB01008987	15,549,902–15,551,014	370	1	t, p	Long
AgGPRop4	XM_003435711.1	AGAP012982	AAAB01008987	15,548,576–15,547,464	370	1	t, p	Long
AgGPRop5	XM_001238570.2	AGAP001162	AAAB01008987	15,552,322–15,553,524	378	2	t, p	Long
AgGPRop6	XM_322000.3	AGAP001161	AAAB01008987	15,555,427–15,556,642	372	2	t, p	Long
AgGPRop7	XM_312478.3	AGAP002462	AAAB01008859	9,719,568–9,718,344	374	2	t, p	Long
AgGPRop8	XM_001688738.1	AGAP006126	AAAB01008960	13,070,327–13,075,141	379	5	t, p	Ultraviolet
AgGPRop9	XM_319247.2	AGAP010089	AAAB01008980	12,661,959–12,660,706	367	3	t, p	Short
AgGPRop10	XM_308329.4	AGAP007548	AAAB01008807	1,869,762–1,884,337	463	3	t, p	Rh7-like
AgGPRop11	XM_312503.4	AGAP002443	AAAB01008859	10,064,831–10,075,172	460	5	t, -	Pteropsin
AgGPRop12	XM_312502.2	AGAP002444	AAAB01008859	10,056,116–10,044,185	433	5	t, p	Pteropsin
Cx. quinquefasciatus
CqGPRop1	XM_001845645.1	CPIJ004067	3.60	303,692–304,879	374	2	-	Long
CqGPRop2	XM_001846589.1	CPIJ005000	3.82	144,908–146,098	378	2	-	Short
CqGPRop3	XM_001851105.1	CPIJ009246	3.237	371,783–376,427	379	4	t, -	Ultraviolet
CqGPRop4	XM_001861603.1	CPIJ011419	3.327	113,980–120,849	466	5	-	Rh7-like
CqGPRop5	XM_001862130.1	CPIJ012052	3.358	153,562–154,668	368	1	t, -	Long
CqGPRop6	XM_001862163.1	CPIJ011571	3.361	253,314–254,429	371	1	t, -	Long
CqGPRop7	XM_001862165.1	CPIJ011573	3.361	260,306–261,487	373	2	t, -	Long
CqGPRop8	XM_001862166.1	CPIJ011574	3.361	267,771–268,892	373	1	t, -	Long
CqGPRop9	XM_001862168.1	CPIJ011576	3.361	285,932–287,053	373	1	t, -	Long
CqGPRop10 ^c	XM_001863451.1	CPIJ013056	3.447	159,930–161,031	351	1	-	Long
CqGPRop11	XM_001863511.1	CPIJ013408	3.452	5394–6590	377	2	-	Short
CqGPRop12	XM_001864516.1	CPIJ014334	3.529	288,784–316,273	411	5	-	Pteropsin
CqGPRop13	XM_001870251.1	CPIJ020021	3.2251	5950–7074	374	1	t, -	Long

^aAnnotations from Hill et al. [25], Nene et al. [13] and Arensburger et al. [14]. Revised opsin annotations were produced using the AaegL1.2, AgamP3.5 and Cpip1.2 gene sets from VectorBase; ^bExpression evidence for Ae. aegypti, An. gambiae and Cx. quinquefasciatus obtained from PCR or RT-PCR data (Additional file 1: Table S3), ESTs (Additional file 1: Table S2), Microarrays [40,41,42], RNAseq [43, 53] and mass spectrometry [44,45,46]; p, peptide evidence; t, transcript evidence; -, absence of transcript or peptide evidence; ^cIndicates incomplete gene model; N.A. not available

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ISSN: 2730-7182

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