Skip to main content

Table 3 Results of recombination analysis on the slpA MSA

From: Surface layer proteins from virulent Clostridium difficile ribotypes exhibit signatures of positive selection with consequences for innate immune response

Ribotype

Parent Sequence

Recombination Detection Method

P-Value

Amino Acid position

RT 017

RT 012

RDB

4.98 x 10−6

1 – 33

RT 027

RT 001

RDB

3.44 x 10−6

174 – 209

  1. Recombination events detected using RDP v3.44 (Martin and Rybicki, 2000) are displayed. Details of ribotype; the ribotype of the parent sequence with which recombination has occurred; detection method; P-value, and the position of the recombination event in the multiple sequence alignment are all given