Table 4 Precision (prec) and sensitivity (sens) as a function of the proportion of differentially selected sites (f) in condition 3, under model M1 and M2
From: Detecting consistent patterns of directional adaptation using differential selection codon models
Threshold | M1 | M2 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
f = 0.5 | f = 0.1 | f = 0.05 | f = 0.5 | f = 0.1 | f = 0.05 | |||||||
Prec | Sens | Prec | Sens | Prec | Sens | Prec | Sens | Prec | Sens | Prec | Sens | |
>0.50 | 26.6 | 53.2 | 5.2 | 51.6 | 2.5 | 49.8 | 2.7 | 54.3 | 5.1 | 51.0 | 26.1 | 52.2 |
>0.55 | 40.2 | 12.0 | 8.3 | 10.7 | 4.0 | 10.2 | 4.4 | 11.7 | 8.3 | 10.8 | 37.2 | 10.9 |
>0.60 | 47.2 | 8.3 | 10.7 | 7.6 | 5.5 | 7.4 | 5.7 | 7.9 | 10.5 | 7.6 | 44.1 | 7.4 |
>0.65 | 54.1 | 6.2 | 13.6 | 5.5 | 7.5 | 5.6 | 6.7 | 5.1 | 13.5 | 5.4 | 49.5 | 5.0 |
>0.70 | 64.7 | 3.9 | 21.4 | 3.7 | 11.9 | 3.6 | 9.9 | 2.9 | 21.4 | 3.3 | 60.2 | 2.9 |
>0.75 | 75.6 | 3.0 | 32.1 | 2.9 | 18.1 | 2.6 | 14.3 | 1.8 | 34.4 | 2.5 | 70.7 | 1.9 |
>0.80 | 83.5 | 2.4 | 44.4 | 2.3 | 27.5 | 2.1 | 22.7 | 1.2 | 50.3 | 1.8 | 80.8 | 1.2 |
>0.85 | 90.7 | 1.8 | 61.6 | 1.8 | 46.4 | 1.8 | 38.2 | 0.8 | 67.1 | 1.1 | 88.7 | 0.7 |
>0.90 | 93.7 | 1.4 | 77.3 | 1.3 | 64.1 | 1.3 | 66.7 | 0.4 | 79.4 | 0.6 | 97.1 | 0.4 |
>0.95 | 96.8 | 1.0 | 89.2 | 0.8 | 89.1 | 0.9 | 100 | 0.1 | 100 | 0.2 | 98.3 | 0.1 |