TY - BOOK AU - Wright, S. PY - 1932 DA - 1932// TI - The roles of mutation, inbreeding, crossbreeding and selection in evolution ID - Wright1932 ER - TY - JOUR AU - Michalakis, Y. AU - Slatkin, M. PY - 1996 DA - 1996// TI - Interaction of selection and recombination in the fixation of negative-epistatic genes JO - Genet Res VL - 67 UR - https://doi.org/10.1017/S0016672300033747 DO - 10.1017/S0016672300033747 ID - Michalakis1996 ER - TY - JOUR AU - Weinreich, D. M. AU - Chao, L. AU - Phillips, P. PY - 2005 DA - 2005// TI - Rapid evolutionary escape by large populations from local fitness peaks is likely in nature JO - Evolution VL - 59 UR - https://doi.org/10.1111/j.0014-3820.2005.tb01769.x DO - 10.1111/j.0014-3820.2005.tb01769.x ID - Weinreich2005 ER - TY - JOUR AU - Eshel, I. PY - 1981 DA - 1981// TI - On the survival probability of a slightly advantageous mutant gene with a general distribution of progeny size—a branching process model JO - J Math Biol VL - 12 UR - https://doi.org/10.1007/BF00276922 DO - 10.1007/BF00276922 ID - Eshel1981 ER - TY - JOUR AU - Neidhart, J. AU - Szendro, I. G. AU - Krug, J. PY - 2014 DA - 2014// TI - Adaptation in tunably rugged fitness landscapes: the rough Mount Fuji model JO - Genetics VL - 198 UR - https://doi.org/10.1534/genetics.114.167668 DO - 10.1534/genetics.114.167668 ID - Neidhart2014 ER - TY - STD TI - Kingman J. A simple model for the balance between selection and mutation. J Appl Probab. 1978:1–12. ID - ref6 ER - TY - JOUR AU - Kauffman, S. A. AU - Weinberger, E. D. PY - 1989 DA - 1989// TI - The NK model of rugged fitness landscapes and its application to maturation of the immune response JO - J Theor Biol VL - 141 UR - https://doi.org/10.1016/S0022-5193(89)80019-0 DO - 10.1016/S0022-5193(89)80019-0 ID - Kauffman1989 ER - TY - JOUR AU - Obolski, U. AU - Ram, Y. AU - Hadany, L. PY - 2017 DA - 2017// TI - Key issues review: evolution on rugged adaptive landscapes JO - bioRxiv VL - 1 ID - Obolski2017 ER - TY - BOOK AU - Gavrilets, S. PY - 2004 DA - 2004// TI - Fitness landscapes and the origin of species (MPB-41) PB - Princeton University Press Princeton CY - NJ ID - Gavrilets2004 ER - TY - STD TI - Whitlock MC. Variance-induced peak shifts. Evolution. 1995:252–9. ID - ref10 ER - TY - STD TI - Whitlock MC. Founder effects and peak shifts without genetic drift: adaptive peak shifts occur easily when environments fluctuate slightly. Evolution. 1997:1044–8. ID - ref11 ER - TY - BOOK AU - Bennett, J. H. PY - 1983 DA - 1983// TI - Natural selection, heredity, and eugenics: including selected correspondence of RA Fisher with Leonard Darwin and others ID - Bennett1983 ER - TY - JOUR AU - Mallet, J. PY - 2010 DA - 2010// TI - Shift happens! Shifting balance and the evolution of diversity in warning colour and mimicry JO - Ecological Entomology VL - 35 UR - https://doi.org/10.1111/j.1365-2311.2009.01137.x DO - 10.1111/j.1365-2311.2009.01137.x ID - Mallet2010 ER - TY - JOUR AU - Johnson, N. PY - 2008 DA - 2008// TI - Sewall Wright and the development of shifting balance theory JO - Nature Education VL - 1 ID - Johnson2008 ER - TY - JOUR AU - Wade, M. J. AU - Goodnight, C. J. PY - 1991 DA - 1991// TI - Wright's shifting balance theory: an experimental study JO - Science(Washington) VL - 253 UR - https://doi.org/10.1126/science.1887214 DO - 10.1126/science.1887214 ID - Wade1991 ER - TY - JOUR AU - Coyne, J. A. AU - Barton, N. H. AU - Turelli, M. PY - 2000 DA - 2000// TI - Is Wright's shifting balance process important in evolution? JO - Evolution VL - 54 UR - https://doi.org/10.1111/j.0014-3820.2000.tb00033.x DO - 10.1111/j.0014-3820.2000.tb00033.x ID - Coyne2000 ER - TY - STD TI - Coyne JA, Barton NH, Turelli M. Perspective: a critique of Sewall Wright's shifting balance theory of evolution. Evolution. 1997:643–71. ID - ref17 ER - TY - JOUR AU - Bitbol, A. -. F. AU - Schwab, D. J. PY - 2014 DA - 2014// TI - Quantifying the role of population subdivision in evolution on rugged fitness landscapes JO - PLoS Comput Biol VL - 10 UR - https://doi.org/10.1371/journal.pcbi.1003778 DO - 10.1371/journal.pcbi.1003778 ID - Bitbol2014 ER - TY - JOUR AU - Hadany, L. PY - 2003 DA - 2003// TI - Adaptive peak shifts in a heterogenous environment JO - Theor Popul Biol VL - 63 UR - https://doi.org/10.1016/S0040-5809(02)00011-4 DO - 10.1016/S0040-5809(02)00011-4 ID - Hadany2003 ER - TY - JOUR AU - Ram, Y. AU - Hadany, L. PY - 2014 DA - 2014// TI - Stress-induced mutagenesis and complex adaptation JO - Proc R Soc B Biol Sci VL - 281 UR - https://doi.org/10.1098/rspb.2014.1025 DO - 10.1098/rspb.2014.1025 ID - Ram2014 ER - TY - JOUR AU - Hadany, L. AU - Beker, T. PY - 2003 DA - 2003// TI - Fitness-associated recombination on rugged adaptive landscapes JO - J Evol Biol VL - 16 UR - https://doi.org/10.1046/j.1420-9101.2003.00586.x DO - 10.1046/j.1420-9101.2003.00586.x ID - Hadany2003 ER - TY - STD TI - Williams SM, Sarkar S. Assortative mating and the adaptive landscape. Evolution. 1994:868–75. ID - ref22 ER - TY - JOUR AU - Weissman, D. B. AU - Feldman, M. W. AU - Fisher, D. S. PY - 2010 DA - 2010// TI - The rate of fitness-valley crossing in sexual populations JO - Genetics VL - 186 UR - https://doi.org/10.1534/genetics.110.123240 DO - 10.1534/genetics.110.123240 ID - Weissman2010 ER - TY - JOUR AU - Weissman, D. B. AU - Desai, M. M. AU - Fisher, D. S. AU - Feldman, M. W. PY - 2009 DA - 2009// TI - The rate at which asexual populations cross fitness valleys JO - Theor Popul Biol VL - 75 UR - https://doi.org/10.1016/j.tpb.2009.02.006 DO - 10.1016/j.tpb.2009.02.006 ID - Weissman2009 ER - TY - JOUR AU - Eshel, I. AU - Feldman, M. W. PY - 1970 DA - 1970// TI - On the evolutionary effect of recombination JO - Theor Popul Biol VL - 1 UR - https://doi.org/10.1016/0040-5809(70)90043-2 DO - 10.1016/0040-5809(70)90043-2 ID - Eshel1970 ER - TY - JOUR AU - Karlin, S. AU - McGregor, J. PY - 1971 DA - 1971// TI - On mutation selection balance for two-locus haploid and diploid populations JO - Theor Popul Biol VL - 2 UR - https://doi.org/10.1016/0040-5809(71)90005-0 DO - 10.1016/0040-5809(71)90005-0 ID - Karlin1971 ER - TY - JOUR AU - Iwasa, Y. AU - Michor, F. AU - Nowak, M. A. PY - 2004 DA - 2004// TI - Stochastic tunnels in evolutionary dynamics JO - Genetics VL - 166 UR - https://doi.org/10.1534/genetics.166.3.1571 DO - 10.1534/genetics.166.3.1571 ID - Iwasa2004 ER - TY - JOUR AU - Komarova, N. L. AU - Sengupta, A. AU - Nowak, M. A. PY - 2003 DA - 2003// TI - Mutation–selection networks of cancer initiation: tumor suppressor genes and chromosomal instability JO - J Theor Biol VL - 223 UR - https://doi.org/10.1016/S0022-5193(03)00120-6 DO - 10.1016/S0022-5193(03)00120-6 ID - Komarova2003 ER - TY - BOOK AU - Kagel, J. H. AU - Roth, A. E. PY - 1995 DA - 1995// TI - The handbook of experimental economics: Princeton university press Princeton, NJ ID - Kagel1995 ER - TY - JOUR AU - Clarke, B. PY - 1979 DA - 1979// TI - The evolution of genetic diversity JO - Proc R Soc Lond B Biol Sci VL - 205 UR - https://doi.org/10.1098/rspb.1979.0079 DO - 10.1098/rspb.1979.0079 ID - Clarke1979 ER - TY - JOUR AU - Latter, B. PY - 1973 DA - 1973// TI - The island model of population differentiation: a general solution JO - Genetics VL - 73 ID - Latter1973 ER - TY - JOUR AU - Wright, S. PY - 1943 DA - 1943// TI - Isolation by distance JO - Genetics VL - 28 ID - Wright1943 ER - TY - JOUR AU - Karasov, T. AU - Messer, P. W. AU - Petrov, D. A. PY - 2010 DA - 2010// TI - Evidence that adaptation in drosophila is not limited by mutation at single sites JO - PLoS Genet VL - 6 UR - https://doi.org/10.1371/journal.pgen.1000924 DO - 10.1371/journal.pgen.1000924 ID - Karasov2010 ER - TY - JOUR AU - Hermisson, J. AU - Pennings, P. S. PY - 2005 DA - 2005// TI - Soft sweeps JO - Genetics VL - 169 UR - https://doi.org/10.1534/genetics.104.036947 DO - 10.1534/genetics.104.036947 ID - Hermisson2005 ER - TY - JOUR AU - Whitlock, M. C. PY - 2003 DA - 2003// TI - Fixation probability and time in subdivided populations JO - Genetics VL - 164 ID - Whitlock2003 ER - TY - JOUR AU - Wright, S. PY - 1988 DA - 1988// TI - Surfaces of selective value revisited JO - Am Nat VL - 131 UR - https://doi.org/10.1086/284777 DO - 10.1086/284777 ID - Wright1988 ER - TY - JOUR AU - Komarova, N. L. PY - 2014 DA - 2014// TI - Spatial interactions and cooperation can change the speed of evolution of complex phenotypes JO - Proc Natl Acad Sci VL - 111 UR - https://doi.org/10.1073/pnas.1400828111 DO - 10.1073/pnas.1400828111 ID - Komarova2014 ER - TY - JOUR AU - Benton, M. J. PY - 2009 DA - 2009// TI - The red queen and the court jester: species diversity and the role of biotic and abiotic factors through time JO - Science VL - 323 UR - https://doi.org/10.1126/science.1157719 DO - 10.1126/science.1157719 ID - Benton2009 ER - TY - JOUR AU - West, S. A. AU - Griffin, A. S. AU - Gardner, A. PY - 2007 DA - 2007// TI - Evolutionary explanations for cooperation JO - Curr Biol VL - 17 UR - https://doi.org/10.1016/j.cub.2007.06.004 DO - 10.1016/j.cub.2007.06.004 ID - West2007 ER - TY - JOUR AU - Nowak, M. A. PY - 2006 DA - 2006// TI - Five rules for the evolution of cooperation JO - Science VL - 314 UR - https://doi.org/10.1126/science.1133755 DO - 10.1126/science.1133755 ID - Nowak2006 ER - TY - JOUR AU - Axelrod, R. AU - Hamilton, W. D. PY - 1981 DA - 1981// TI - The evolution of cooperation JO - Science VL - 211 UR - https://doi.org/10.1126/science.7466396 DO - 10.1126/science.7466396 ID - Axelrod1981 ER - TY - BOOK AU - Hamilton, W. PY - 1964 DA - 1964// TI - The genetical evolution of social behaviour. I ID - Hamilton1964 ER - TY - STD TI - Trivers RL. The evolution of reciprocal altruism. Q Rev Biol. 1971:35–57. ID - ref43 ER - TY - JOUR AU - Lewin-Epstein, O. AU - Aharonov, R. AU - Hadany, L. PY - 2017 DA - 2017// TI - Microbes can help explain the evolution of host altruism JO - Nat Commun VL - 8 UR - https://doi.org/10.1038/ncomms14040 DO - 10.1038/ncomms14040 ID - Lewin-Epstein2017 ER - TY - JOUR AU - Levin, S. A. PY - 2014 DA - 2014// TI - Public goods in relation to competition, cooperation, and spite JO - Proc Natl Acad Sci VL - 111 UR - https://doi.org/10.1073/pnas.1400830111 DO - 10.1073/pnas.1400830111 ID - Levin2014 ER - TY - JOUR AU - Gueijman, A. AU - Ayali, A. AU - Ram, Y. AU - Hadany, L. PY - 2013 DA - 2013// TI - Dispersing away from bad genotypes: the evolution of fitness-associated dispersal (FAD) in homogeneous environments JO - BMC Evol Biol VL - 13 UR - https://doi.org/10.1186/1471-2148-13-125 DO - 10.1186/1471-2148-13-125 ID - Gueijman2013 ER - TY - JOUR AU - Visser, J. A. G. AU - Krug, J. PY - 2014 DA - 2014// TI - Empirical fitness landscapes and the predictability of evolution JO - Nat Rev Genet VL - 15 UR - https://doi.org/10.1038/nrg3744 DO - 10.1038/nrg3744 ID - Visser2014 ER - TY - JOUR AU - Salverda, M. L. AU - Dellus, E. AU - Gorter, F. A. AU - Debets, A. J. AU - Oost, J. AU - Hoekstra, R. F. AU - Tawfik, D. S. AU - Visser, J. A. G. PY - 2011 DA - 2011// TI - Initial mutations direct alternative pathways of protein evolution JO - PLoS Genet VL - 7 UR - https://doi.org/10.1371/journal.pgen.1001321 DO - 10.1371/journal.pgen.1001321 ID - Salverda2011 ER - TY - JOUR AU - Andersson, D. I. AU - Hughes, D. PY - 2010 DA - 2010// TI - Antibiotic resistance and its cost: is it possible to reverse resistance? JO - Nat Rev Microbiol VL - 8 ID - Andersson2010 ER - TY - JOUR AU - Ochman, H. AU - Lawrence, J. G. AU - Groisman, E. A. PY - 2000 DA - 2000// TI - Lateral gene transfer and the nature of bacterial innovation JO - Nature VL - 405 UR - https://doi.org/10.1038/35012500 DO - 10.1038/35012500 ID - Ochman2000 ER - TY - JOUR AU - Thomas, C. M. AU - Nielsen, K. M. PY - 2005 DA - 2005// TI - Mechanisms of, and barriers to, horizontal gene transfer between bacteria JO - Nat Rev Microbiol VL - 3 UR - https://doi.org/10.1038/nrmicro1234 DO - 10.1038/nrmicro1234 ID - Thomas2005 ER - TY - STD TI - West SA, Diggle SP, Buckling A, Gardner A, Griffin AS. The social lives of microbes. Annu Rev Ecol Evol Syst. 2007:53–77. ID - ref52 ER - TY - JOUR AU - Nadell, C. D. AU - Xavier, J. B. AU - Levin, S. A. AU - Foster, K. R. PY - 2008 DA - 2008// TI - The evolution of quorum sensing in bacterial biofilms JO - PLoS Biol VL - 6 UR - https://doi.org/10.1371/journal.pbio.0060014 DO - 10.1371/journal.pbio.0060014 ID - Nadell2008 ER - TY - JOUR AU - Kreft, J. -. U. PY - 2004 DA - 2004// TI - Biofilms promote altruism JO - Microbiology VL - 150 UR - https://doi.org/10.1099/mic.0.26829-0 DO - 10.1099/mic.0.26829-0 ID - Kreft2004 ER - TY - JOUR AU - Perron, G. G. AU - Inglis, R. F. AU - Pennings, P. S. AU - Cobey, S. PY - 2015 DA - 2015// TI - Fighting microbial drug resistance: a primer on the role of evolutionary biology in public health JO - Evol Appl VL - 8 UR - https://doi.org/10.1111/eva.12254 DO - 10.1111/eva.12254 ID - Perron2015 ER - TY - JOUR AU - Obolski, U. AU - Hadany, L. PY - 2012 DA - 2012// TI - Implications of stress-induced genetic variation for minimizing multidrug resistance in bacteria JO - BMC Med VL - 10 UR - https://doi.org/10.1186/1741-7015-10-89 DO - 10.1186/1741-7015-10-89 ID - Obolski2012 ER - TY - JOUR AU - Obolski, U. AU - Stein, G. Y. AU - Hadany, L. PY - 2015 DA - 2015// TI - Antibiotic restriction might facilitate the emergence of multi-drug resistance JO - PLoS Comput Biol VL - 11 UR - https://doi.org/10.1371/journal.pcbi.1004340 DO - 10.1371/journal.pcbi.1004340 ID - Obolski2015 ER - TY - JOUR AU - Obolski, U. AU - Dellus-Gur, E. AU - Stein, G. Y. AU - Hadany, L. PY - 2016 DA - 2016// TI - Antibiotic cross-resistance in the lab and resistance co-occurrence in the clinic: discrepancies and implications in E. coli. Infection JO - Genetics and Evolution VL - 40 UR - https://doi.org/10.1016/j.meegid.2016.02.017 DO - 10.1016/j.meegid.2016.02.017 ID - Obolski2016 ER - TY - JOUR AU - Caudill, L. AU - Wares, J. R. PY - 2016 DA - 2016// TI - The role of mathematical modeling in designing and evaluating antimicrobial stewardship programs JO - Current Treatment Options in Infectious Diseases VL - 8 UR - https://doi.org/10.1007/s40506-016-0074-8 DO - 10.1007/s40506-016-0074-8 ID - Caudill2016 ER -