Fig. 5

We used the approximately unbiased SH test to compute the confidence levels for phylogenies with the new and existing models on metazoan, vertebrate and invertebrate testing datasets. For each testing alignment D, we computed the site-wise log likelihoods for every (T _i , M _i |D) where M _i is one of six mt models and T _i is the phylogeny of D under M _i . The CONSEL program was used for assessing the confidence levels for each (T _i , M _i |D)