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Fig. 5 | BMC Evolutionary Biology

Fig. 5

From: The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Fig. 5

The heatmap of poTs among 21 individuals from three Primulina populations. poTs, short for paired & overlap tags, is a contig assembled from Tag1s (clustered from read1 of RAD-Seq) at forward and reverse directions of the same restriction enzyme site (RE) and their paired Tag2s (assembled from read2 of RAD-Seq). CpContigs are longer contigs further assembled from all kinds of RAD tags, including poTs. X axis of the heatmap showed the name of poTs, composed by “poT-” and a digit, while the digit represents the position of RE, around the middle position of this poT. The grids filled with different color represent the length of poTs at specific site and specific individual, with the bar shown in the bottom right corner. While black grids mean these poTs were not be assembled. The length distribution of 65 poTs and 21 individuals were shown at the top and the right of heat map, respectively, with the same bar shown at the top right corner

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BMC Ecology and Evolution

ISSN: 2730-7182

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