From: Parallel loss of introns in the ABCB1 gene in angiosperms
 |  | Intron number | Methodologya | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Locus ID | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | Â |
Dicots | Intron presence/absenceb | Â | |||||||||
Fabaceae | |||||||||||
  Phaseolus vulgaris | Phvul.001G179300 | Pb | P | P | P | P | P | P | P | P | Seq |
  Phaseolus vulgaris | Phvul.007G147400 | P | P | P | P | P | P | P | P | P | Seq |
  Medicago truncatula | Medtr7g102070 | P | P | P | P | P | P | P | P | P | Seq |
  Medicago truncatula | Medtr1g063170 | P | P | P | P | P | P | P | P | P | Seq |
  Trifolium pratense | Tp57577_TGAC_v2_gene32830 | P | P | P | P | P | P | P | P | P | Seq |
  Glycine max | Glyma.19G184300 | P | P | P | P | P | P | P | P | P | Seq |
  Glycine max | Glyma.03G183600 | P | P | P | P | P | P | P | P | P | Seq |
  Glycine max | Glyma.10G055000 | P | P | P | P | P | P | P | P | P | Seq |
  Glycine max | Glyma.13G142100 | P | P | P | P | P | P | P | P | P | Seq |
Rosaceae | |||||||||||
  Prunus persica | Prupe.7G129600 | P | P | P | P | P | P | P | P | P | Seq |
  Malus domestica | MDP0000231597 | P | P | P | P | P | P | P | P | P | Seq |
  Malus domestica | MDP0000183294 | P | P | P | P | P | P | P | P | P | Seq |
  Fragaria vesca | gene09601-v1.0-hybrid | P | P | P | P | P | P | P | P | P | Seq |
Cucurbitaceae | |||||||||||
  Cucumis sativus | Cucsa.306720 | P | P | P | P | P | P | P | P | A | Seq |
Rutaceae | |||||||||||
  Citrus clementina | Ciclev10010916m.g | P | P | P | P | P | P | P | P | P | Seq |
  Citrus sinensis | orange1.1g000687m.g | P | P | P | P | P | P | P | P | P | Seq |
Myrtaceae | |||||||||||
  Eucalyptus grandis | Eucgr.K02930 | P | P | P | P | P | P | P | P | P | Seq |
Malvaceae | |||||||||||
  Theobroma cacao | Thecc1EG022244 | P | P | P | P | P | P | P | P | P | Seq |
  Gossypium raimondii | Gorai.002G246800 | P | P | P | P | P | P | P | P | P | Seq |
  Gossypium raimondii | Gorai.006G163000 | P | P | P | P | P | P | P | P | P | Seq |
Brassicaceae | |||||||||||
  Eutrema salsugineum | Thhalv10016150m.g | P | P | P | P | P | P | P | A | P | Seq |
  Capsella grandiflora | Cagra.0558 s0007 | P | P | P | P | P | P | P | P | P | Seq |
  Capsella rubella | Carubv10022511m.g | P | P | P | P | P | P | P | P | P | Seq |
  Boechera stricta | Bostr.23794 s0400 | P | P | P | P | P | P | P | P | P | Seq |
  Brassica rape FPsc | Bra023087 | P | P | P | P | P | P | P | P | P | Seq |
  Brassica rapa FPsc | Bra017216 | P | P | P | P | P | P | P | P | P | Seq |
  Brassica oleracea | Bo3g031410 | P | P | P | P | P | P | P | P | P | Seq |
  Brassica oleracea | Bo4g186480 | P | P | P | P | P | P | P | P | P | Seq |
  Arabidopsis lyrata | 934,330 | P | P | P | P | P | P | P | P | P | Seq |
  Arabidopsis thaliana columbia | AT2G36910 | P | P | P | P | P | P | P | P | P | Seq |
Caricaceae | |||||||||||
  Carica papaya | evm.TU.supercontig_102.36 | P | P | P | P | P | P | P | ND | P | Seq |
Amaranthaceae | |||||||||||
  Chenopodium quinoa | AUR62040338 | P | P | P | P | P | P | P | P | P | Seq |
  Chenopodium quinoa | AUR62042509 | P | P | P | P | P | P | P | P | P | Seq |
Euphorbiaceae | |||||||||||
  Ricinus communis | 30,078.t000079 | P | P | P | P | P | P | P | P | P | Seq |
  Manihot esculenta | Manes.09G065700 | P | P | P | P | P | P | P | P | P | Seq |
  Manihot esculenta | Manes.08G011100 | P | P | P | P | P | P | P | P | P | Seq |
Linaceae | |||||||||||
  Linum usitatissimum | Lus10023929.g | P | A | P | P | P | P | P | P | P | Seq |
Salicaceae | |||||||||||
  Salix purpurea | SapurV1A.1230 s0070 | P | P | P | P | P | P | P | P | P | Seq |
  Salix purpurea | SapurV1A.0584 s0030 | P | P | P | P | P | P | P | P | P | Seq |
  Populus trichocarpa | Potri.006G123900 | P | P | P | P | P | P | P | P | P | Seq |
  Populus trichocarpa | Potri.016G093600 | P | P | P | P | P | P | P | P | P | Seq |
Solanaceae | |||||||||||
  Solanum lycopersicum | Solyc09g008240.2 | P | P | P | P | P | P | P | P | P | Seq |
  Solanum tuberosum | PGSC0003DMG400003889 | P | P | P | P | P | P | P | P | P | Seq |
Phrymaceae | |||||||||||
  Mimulus guttatus | Migut.J00652 | P | P | P | P | P | P | P | P | P | Seq |
  Mimulus guttatus | Migut.L01707 | P | P | P | P | P | P | A | P | P | Seq |
Ranunculaceae | |||||||||||
  Aquilegia coerulea Goldsmith | Aquca_030_00072 | P | P | P | P | P | P | P | P | P | Seq |
  Aquilegia coerulea Goldsmith | Aquca_062_00022 | P | P | P | P | P | P | P | P | P | Seq |
Non-grass monocots (except Poales) | |||||||||||
  Zostera marina | Zosma16g00300 | P | A | P | P | P | P | P | A | A | Seq |
  Spirodela polyrhiza | Spipo1G0026900 | P | P | P | P | P | P | P | P | P | Seq |
  Phoenix dactylifera | LOC103714888 | P | P | P | P | P | P | P | P | P | Seq |
  Phoenix dactylifera | LOC103706998 | P | P | P | P | P | P | P | P | P | Seq |
  Musa acuminata | GSMUA_Achr4G12130_001 | P | P | P | P | P | P | P | P | P | Seq |
  Musa acuminata | GSMUA_Achr4G04430_001 | P | P | P | P | P | P | P | P | P | Seq |
Poales (except Poaceae) | |||||||||||
  Ananas comosus | Aco010196 | P | P | P | P | P | P | P | P | P | Seq |
  Typha latifolia | Not assigned | P | P | P | P | P | P | P* | P | P | LR-PCR/Seq |
  Ecdeiocolea spp. | Not assigned | A | P | P | P | P | P | P | P | P | LR-PCR/Seq |
  Mayaca spp. | Not assigned | P | P | P | A | P | P | P | P | A | LR-PCR/Seq |
Poaceae | |||||||||||
  Streptochaeta spp. | Not assigned | A | P | P | P | P | P | P | P | P | LR-PCR/Seq |
  Anomochloa spp. | Not assigned | A* | P* | P* | A* | ND | P | P* | P | A | PCR/Seq |
  Pharus mezhii | Not assigned | A* | P* | P | P* | P | P* | ND | P | ND | PCR/Seq |
  Leersia perrieri | LPERR08G20590 | A | A | A | A | A | A | P | A | A | Seq |
  Oryza sativa ssp. indica | BGIOSGA029208 | A | A | A | A | P | A | P | A | A | Seq |
  Oryza sativa ssp. japonica | LOC_Os08g45030 | A | A | A | A | P | A | P | A | A | Seq |
  Aulonemia spp. | Not assigned | A* | P* | A* | A* | P | ND | P | A | ND | PCR/Seq |
  Bambusa spp. | Not assigned | A | P | A | A | P | P | P* | A | A | PCR/Seq |
  Phyllostachys spp. | Not assigned | A | P | A | A | P | P | P | A | A | LR-PCR/Seq |
  Phyllostachys edulis | PH01000979 | A | P | A | A | P | P | P | A | A | Seq |
  Phyllostachys edulis | PH01001487 | A | P | A | A | P | P | P | A | A | Seq |
  Brachypodium distachyon | Bradi3g12627 | A | A | A | A | P | A | P | A | A | Seq |
  Brachypodium stacei | Brast03G311000 | A | A | A | A | P | A | P | A | A | Seq |
  Hordeum vulgare | MLOC_5438 | A | A | A | A | P | P | P | A | A | Seq |
  Aegilops tauschii | F775_52675 | A | A | A | A | P | P | P | A | A | Seq |
  Triticum urartu | TRIUR3_22724 | A | A | A | ND | P | P | P | A | A | Seq |
  Eragrostis tef | JN672670 | A | A | A | A | A | P | P | A | A | Seq |
  Eragrostis tef | JN672669 | A | A | A | A | A | P | P | A | A | Seq |
  Zoysia spp. | Not assigned | A | A | A | A | A | A | P | A | A | LR-PCR/Seq |
  Oropetium thomaeum | Oropetium_20150105_14444 | A | P | A | A | A | A | P | A | A | Seq |
  Eleusine coracana | Not assigned | A | P | A | A | A | A | P | A | A | Seq |
  Micraira subilifolia | Not assigned | A* | A* | A* | A* | P | P | ND | A | A | PCR/Seq |
  Phragmites australis | Not assigned | A* | P* | A* | A* | P | P | ND | A | A | PCR/Seq |
  Danthoniopsis dinteri | Not assigned | A | P | A | A | P | ND | ND | A | A | PCR |
  Chasmanthium laxum | Not assigned | A | P | A | A | P | P | P | A | A | Seq |
  Paspalum vaginatum | Not assigned | A | P | A | A | A | P | P | A | A | LRPCR/Seq |
  Zea mays | GRMZM2G315375 | A | P | A | A | P | P | P | A | A | Seq |
  Sorghum bicolor | AY372819.1 | A | P | A | A | P | P | P | A | A | Seq |
  Arundinella hirta | Not assigned | A | P | A | A | P | ND | P* | A | A | PCR/Seq |
  Andropogon virginicus | Not assigned | A | P | A | A | P | P | P | A | A | Seq |
  Andropogon gerardii | Not assigned | A | P | A | A | P | ND | P* | A | A | PCR/Seq |
  Acroceras macrum | Not assigned | A | P | A | A | A | ND | P* | A | ND | PCR/Seq |
Sacciolepis myosuroides | Not assigned | A | P | A | A | P | ND | P* | A | A | PCR/Seq |
  Dichanthelium oligosanthes | Not assigned | A | P | A | A | A | P | P | A | A | Seq |
  Panicum virgatum | Pavir.6NG364900 | A | P | A | A | A | P | P | A | A | Seq |
  Panicum virgatum | Pavir.6KG414900 | A | P | A | A | A | P | P | A | A | Seq |
  Panicum hallii | Pahal.F00317 | A | P | A | A | A | P | P | A | A | Seq |
  Setaria italica | Seita.6G253500 | A | A | A | A | A | P | P | A | A | Seq |
  Setaria viridis | Sevir.6G258000 | A | A | A | A | A | P | P | A | A | Seq |
  Cenchrus americanus | CaABCB1 | A | A | A | A | A | P | P | A | A | Seq |
  Brachiaria spp. | Not assigned | A | A | A | A | A | P | ND | A | ND | PCR |
  Urochloa abyss | Urochola_abyss_gt1kb | A | A | A | A | A | P | P | A | A | Seq |
Basal angiosperm | |||||||||||
  Amborella trichopoda | evm_27.TU.AmTr_v1.0_scaffold00076.86 | P | P | P | P | P | P | P | P | P | Seq |