Table 1 Main features of the satDNAs families isolated from the R.bergii genome. The FISH signals on the neo-Y chromosome corresponding to the most common pattern seen at mitosis
Repeat family | Monomer length (bp) | AT% | Genome proportion% | Nucleotide divergence % (±se) | Reads/Contigs | Chromosomal position detected by FISH | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | neo-X | neo-Y | ||||||
Rber1 | 52 | 63.6 | 0.551 | 16.4 (±1) | 34.9 | c | c | c | c | – | – | – | – | – | c | c | p |
Rber59 | 22 | 39.1 | 0.152 | 10.8 (±2.4) | 475 | c | c | c | c | c | – | – | c | – | – | c |  |
Rber61 | 11 | 63.6 | 0.146 | 15.2 (±3.2) | 143.18 | c,p | c | c | c | c | c | c,p | – | – | c | c | – |
Rber158 | 177 | 52.9 | 0.064 | 16.4 (±1.6) | 110.7 | – | – | – | – | – | – | – | – | c, p | – | i | 3i,p |
Rber185 | 22 | 56.5 | 0.053 | 8.7 (±2.5) | 832 | – | – | – | c | – | i | i | – | – | – | – | – |
Rber248 | 165 | 59.4 | 0.035 | 13.6 (±2.2) | 86.05 | – | – | – | – | – | – | – | – | – | – | – | p |
Rber299 | 285 | 55.1 | 0.028 | 6.2 (±1.1) | 323 | – | – | – | – | – | – | – | – | – | – | – | p |
Rber370 | 16 | 56.2 | 0.019 | 17.9 (±1.7) | 15.78 | c | c | c | c | c |  | c | – | – | c | c | – |
Rber491 | 121 | 64.8 | 0.012 | 12.6 (±1.5) | 25.82 | c | c,d | c,d | c,d | c,i,d | c,d | c,d | c | – | c | c | – |
Rber520 | 5 | 60 | 0.011 | 16.1 (±8.3) | 64.12 | c | c | c | c | c | – | – | c | – | – | c | – |