TY - BOOK AU - MacHardy, W. E. PY - 1996 DA - 1996// TI - Apple scab: biology, epidemiology and management PB - APS Press CY - St. Paul, MN ID - MacHardy1996 ER - TY - JOUR AU - Tenzer, I. AU - Gessler, C. PY - 1999 DA - 1999// TI - Genetic diversity of Venturia inaequalis across Europe JO - Eur J Plant Pathol VL - 105 UR - https://doi.org/10.1023/A:1008775900736 DO - 10.1023/A:1008775900736 ID - Tenzer1999 ER - TY - JOUR AU - Flor, H. H. PY - 1971 DA - 1971// TI - Current status of the gene-for-gene concept JO - Annu Rev Phytopathol VL - 9 UR - https://doi.org/10.1146/annurev.py.09.090171.001423 DO - 10.1146/annurev.py.09.090171.001423 ID - Flor1971 ER - TY - JOUR AU - Bus, V. G. AU - Rikkerink, E. H. AU - Caffier, V. AU - Durel, C. E. AU - Plummer, K. M. PY - 2011 DA - 2011// TI - Revision of the nomenclature of the differential host-pathogen interactions of Venturia inaequalis and Malus JO - Annu Rev Phytopathol VL - 49 UR - https://doi.org/10.1146/annurev-phyto-072910-095339 DO - 10.1146/annurev-phyto-072910-095339 ID - Bus2011 ER - TY - JOUR AU - Parisi, L. AU - Lespinasse, Y. AU - Guillaumes, J. AU - Krüger, J. PY - 1993 DA - 1993// TI - A new race of Venturia inaequalis virulent to apples with resistance due to the Vf gene JO - Phytopathology VL - 83 UR - https://doi.org/10.1094/Phyto-83-533 DO - 10.1094/Phyto-83-533 ID - Parisi1993 ER - TY - JOUR AU - Roberts, A. L. AU - Crute, I. R. PY - 1994 DA - 1994// TI - Apple scab resistance from Malus floribunda 821 (Vf) is rendered ineffective by isolates of Venturia inaequalis from Malus floribunda JO - Nor J Agric Sci VL - 17 ID - Roberts1994 ER - TY - JOUR AU - Parisi, L. AU - Laurens, F. AU - Didelot, F. AU - Evans, K. AU - Fischer, C. AU - Fouillet, V. AU - Gennari, F. AU - Kemp, H. AU - Lateur, M. AU - Patocchi, A. AU - Schouten, H. J. AU - Tsipouridis, C. PY - 2006 DA - 2006// TI - Geographical distribution of Venturia inaequalis strains virulent to the Vf gene in Europe JO - IOBC WPRS BULLETIN VL - 29 ID - Parisi2006 ER - TY - JOUR AU - Masny, S. PY - 2017 DA - 2017// TI - Occurrence of Venturia inaequalis races in Poland able to overcome specific apple scab resistance genes JO - Eur J Plant Pathol VL - 147 UR - https://doi.org/10.1007/s10658-016-1003-x DO - 10.1007/s10658-016-1003-x ID - Masny2017 ER - TY - JOUR AU - Guérin, F. AU - Le Cam, B. PY - 2004 DA - 2004// TI - Breakdown of the scab resistance gene Vf in apple leads to a founder effect in populations of the fungal pathogen Venturia inaequalis JO - Phytopathology VL - 94 UR - https://doi.org/10.1094/PHYTO.2004.94.4.364 DO - 10.1094/PHYTO.2004.94.4.364 ID - Guérin2004 ER - TY - JOUR AU - Gladieux, P. AU - Guérin, F. AU - Giraud, T. AU - Caffier, V. AU - Lemaire, C. AU - Parisi, L. AU - Didelot, F. AU - Le Cam, B. PY - 2011 DA - 2011// TI - Emergence of novel fungal pathogens by ecological speciation: importance of the reduced viability of immigrants JO - Mol Ecol VL - 20 UR - https://doi.org/10.1111/j.1365-294X.2011.05288.x DO - 10.1111/j.1365-294X.2011.05288.x ID - Gladieux2011 ER - TY - JOUR AU - Guérin, F. AU - Gladieux, P. AU - Le Cam, B. PY - 2007 DA - 2007// TI - Origin and colonization history of newly virulent strains of the phytopathogenic fungus Venturia inaequalis JO - Fungal Genet Biol VL - 44 UR - https://doi.org/10.1016/j.fgb.2006.10.005 DO - 10.1016/j.fgb.2006.10.005 ID - Guérin2007 ER - TY - JOUR AU - Leroy, T. AU - Lemaire, C. AU - Dunemann, F. AU - Le Cam, B. PY - 2013 DA - 2013// TI - The genetic structure of a Venturia inaequalis population in a heterogeneous host population composed of different Malus species JO - BMC Evol Biol VL - 13 UR - https://doi.org/10.1186/1471-2148-13-64 DO - 10.1186/1471-2148-13-64 ID - Leroy2013 ER - TY - JOUR AU - Lemaire, C. AU - De Gracia, M. AU - Leroy, T. AU - Michalecka, M. AU - Lindhard-Pedersen, H. AU - Guérin, F. AU - Gladieux, P. AU - Le Cam, B. PY - 2016 DA - 2016// TI - Emergence of new virulent populations of apple scab from nonagricultural disease reservoirs JO - New Phytol VL - 209 UR - https://doi.org/10.1111/nph.13658 DO - 10.1111/nph.13658 ID - Lemaire2016 ER - TY - JOUR AU - Leroy, T. AU - Caffier, V. PY - 2016 DA - 2016// TI - Celton J M, anger N, Durel C E, Lemaire C, le cam B: when virulence originates from nonagricultural hosts: evolutionary and epidemiological consequences of introgressions following secondary contacts in Venturia inaequalis JO - New Phytol VL - 210 UR - https://doi.org/10.1111/nph.13873 DO - 10.1111/nph.13873 ID - Leroy2016 ER - TY - JOUR AU - Guérin, F. AU - Franck, P. AU - Loiseau, A. AU - Devaux, M. AU - Le Cam, B. PY - 2004 DA - 2004// TI - Isolation of 21 new polymorphic microsatellite loci in the phytopathogenic fungus Venturia inaequalis JO - Mol Ecol Notes VL - 4 UR - https://doi.org/10.1111/j.1471-8286.2004.00637.x DO - 10.1111/j.1471-8286.2004.00637.x ID - Guérin2004 ER - TY - JOUR AU - Ebrahimi, L. AU - Fotuhifar, K. B. AU - Nikkhah, M. J. AU - Naghavi, M. R. AU - Baisakh, N. PY - 2016 DA - 2016// TI - Population genetic structure of apple scab (Venturia inaequalis (Cooke) G. Winter) in Iran JO - PLoS One VL - 11 UR - https://doi.org/10.1371/journal.pone.0160737 DO - 10.1371/journal.pone.0160737 ID - Ebrahimi2016 ER - TY - JOUR AU - Tenzer, I. PY - 1999 DA - 1999// TI - Degli Ivanissevich S, Morgante M, Gessler C: identification of microsatellites markers and their application to population genetics of Venturia inaequalis JO - Phytopathology VL - 89 UR - https://doi.org/10.1094/PHYTO.1999.89.9.748 DO - 10.1094/PHYTO.1999.89.9.748 ID - Tenzer1999 ER - TY - JOUR AU - Meirmans, P. G. AU - Van Tienderen, P. H. PY - 2004 DA - 2004// TI - GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms JO - Mol Ecol Notes VL - 4 UR - https://doi.org/10.1111/j.1471-8286.2004.00770.x DO - 10.1111/j.1471-8286.2004.00770.x ID - Meirmans2004 ER - TY - JOUR AU - Cavalli-Sforza, L. L. AU - Edwards, A. W. PY - 1967 DA - 1967// TI - Phylogenetic analysis. Models and estimation procedures JO - Am J Hum Genet VL - 19 ID - Cavalli-Sforza1967 ER - TY - JOUR AU - Dieringer, D. AU - Schlötterer, C. PY - 2003 DA - 2003// TI - Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets JO - Mol Ecol Notes VL - 3 UR - https://doi.org/10.1046/j.1471-8286.2003.00351.x DO - 10.1046/j.1471-8286.2003.00351.x ID - Dieringer2003 ER - TY - JOUR AU - Peakall, R. AU - Smouse, P. E. PY - 2012 DA - 2012// TI - GenAlEx 6.5: genetic analysis in excel. Population genetic software for teaching and research – an update JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts460 DO - 10.1093/bioinformatics/bts460 ID - Peakall2012 ER - TY - JOUR AU - Piry, S. AU - Alapetite, A. AU - Cornuet, J. -. M. AU - Paetkau, D. AU - Baudouin, L. AU - Estoup, A. PY - 2004 DA - 2004// TI - GENECLASS2: a software for genetic assignment and first-generation migrant detection JO - J Hered VL - 95 UR - https://doi.org/10.1093/jhered/esh074 DO - 10.1093/jhered/esh074 ID - Piry2004 ER - TY - JOUR AU - Rannala, B. AU - Mountain, J. L. PY - 1997 DA - 1997// TI - Detecting immigration by using multilocus genotypes JO - Proc Natl Acad Sci VL - 94 UR - https://doi.org/10.1073/pnas.94.17.9197 DO - 10.1073/pnas.94.17.9197 ID - Rannala1997 ER - TY - JOUR AU - Paetkau, D. AU - Slade, R. AU - Burden, M. AU - Estoup, A. PY - 2004 DA - 2004// TI - Genetic assignment methods for the direct, real-time estimation of migration rate using assignment methods: a simulation-based exploration of accuracy and power JO - Mol Ecol VL - 13 UR - https://doi.org/10.1046/j.1365-294X.2004.02008.x DO - 10.1046/j.1365-294X.2004.02008.x ID - Paetkau2004 ER - TY - JOUR AU - Pritchard, J. K. AU - Stephens, M. AU - Donnelly, P. PY - 2000 DA - 2000// TI - Inference of population structure using multilocus genotype data JO - Genetics VL - 155 ID - Pritchard2000 ER - TY - JOUR AU - Evanno, G. AU - Regnaut, S. AU - Goudet, J. PY - 2005 DA - 2005// TI - Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study JO - Mol Ecol VL - 14 UR - https://doi.org/10.1111/j.1365-294X.2005.02553.x DO - 10.1111/j.1365-294X.2005.02553.x ID - Evanno2005 ER - TY - JOUR AU - Kopelman, N. M. AU - Mayzel, J. AU - Jakobsson, M. AU - Rosenberg, N. A. AU - Mayrose, I. PY - 2015 DA - 2015// TI - Clumpak: a program for identifying clustering modes and packaging population structure inferences across K JO - Mol Ecol Resour VL - 15 UR - https://doi.org/10.1111/1755-0998.12387 DO - 10.1111/1755-0998.12387 ID - Kopelman2015 ER - TY - JOUR AU - Francois, O. AU - Ancelet, S. AU - Guillot, G. PY - 2006 DA - 2006// TI - Bayesian clustering using hidden Markov random fields in spatial population genetics JO - Genetics VL - 174 UR - https://doi.org/10.1534/genetics.106.059923 DO - 10.1534/genetics.106.059923 ID - Francois2006 ER - TY - JOUR AU - Chen, C. AU - Durand, E. AU - Forbes, F. AU - François, O. PY - 2007 DA - 2007// TI - Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study JO - Mol Ecol Notes VL - 7 UR - https://doi.org/10.1111/j.1471-8286.2007.01769.x DO - 10.1111/j.1471-8286.2007.01769.x ID - Chen2007 ER - TY - JOUR AU - Durand, E. AU - Jay, F. AU - Gaggiotti, O. E. AU - Francois, O. PY - 2009 DA - 2009// TI - Spatial inference of admixture proportions and secondary contact zones JO - Mol Biol Evol VL - 26 UR - https://doi.org/10.1093/molbev/msp106 DO - 10.1093/molbev/msp106 ID - Durand2009 ER - TY - JOUR AU - Jakobsson, M. AU - Rosenberg, N. A. PY - 2007 DA - 2007// TI - CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm233 DO - 10.1093/bioinformatics/btm233 ID - Jakobsson2007 ER - TY - STD TI - Lewis PO, Zaykin D. Genetic Data Analysis: Computer program for the analysis of allelic data. Version 1.0 (d16c). 2001. Free program distributed by the authors over the internet from http://lewis.eeb.uconn.edu/lewishome/software.html. UR - http://lewis.eeb.uconn.edu/lewishome/software.html ID - ref32 ER - TY - JOUR AU - Nei, M. PY - 1978 DA - 1978// TI - Estimation of average heterozygosity and genetic distance from a small number of individuals JO - Genetics VL - 89 ID - Nei1978 ER - TY - STD TI - Nei M: Molecular evolutionary genetics, 1st Edn edn. New York, USA: Columbia University Press: 1987. ID - ref34 ER - TY - JOUR AU - Goudet, J. PY - 1995 DA - 1995// TI - FSTAT (version 1.2): a computer program to calculate F-statistics JO - J Hered VL - 86 UR - https://doi.org/10.1093/oxfordjournals.jhered.a111627 DO - 10.1093/oxfordjournals.jhered.a111627 ID - Goudet1995 ER - TY - JOUR AU - Excoffier, L. AU - Lischer, H. E. PY - 2010 DA - 2010// TI - Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and windows JO - Mol Ecol Resour VL - 10 UR - https://doi.org/10.1111/j.1755-0998.2010.02847.x DO - 10.1111/j.1755-0998.2010.02847.x ID - Excoffier2010 ER - TY - JOUR AU - Weir, B. S. AU - Cockerham, C. C. PY - 1984 DA - 1984// TI - Estimating F-statistics for the analysis of population structure JO - Evolution VL - 38 ID - Weir1984 ER - TY - STD TI - Belkhir K, Borsa P, Chikhi L, Raufaste N, Catch F: GENETIX 4.0. 5.2., software under windows™ for the genetics of the populations. University of Montpellier, Montpellier, France. 2004. ID - ref38 ER - TY - JOUR AU - McDermott, J. M. AU - McDonald, B. A. PY - 1993 DA - 1993// TI - Gene flow in plant pathosystems JO - Annu Rev Phytopathol VL - 31 UR - https://doi.org/10.1146/annurev.py.31.090193.002033 DO - 10.1146/annurev.py.31.090193.002033 ID - McDermott1993 ER - TY - JOUR AU - Brown, A. H. D. AU - Feldman, M. W. AU - Nevo, E. PY - 1980 DA - 1980// TI - Multilocus structure of natural populations of Hordeum spontaneum JO - Genetics VL - 96 ID - Brown1980 ER - TY - JOUR AU - Agapow, P. M. AU - Burt, A. PY - 2001 DA - 2001// TI - Indices of multilocus linkage disequilibrium JO - Mol Ecol Notes VL - 1 UR - https://doi.org/10.1046/j.1471-8278.2000.00014.x DO - 10.1046/j.1471-8278.2000.00014.x ID - Agapow2001 ER - TY - STD TI - Jensen JL, Bohonak AJ, Kelley ST. Isolation by distance, web service. BMC Genet. 2005;6(1):13. http://www.bio.sdsu.edu/pub/andy/IBD.html. UR - http://www.bio.sdsu.edu/pub/andy/IBD.html ID - ref42 ER - TY - STD TI - Falush D, van Dorp L, Lawson D: A tutorial on how (not) to over-interpret STRUCTURE/ADMIXTURE bar plots. BioRxiv. 2016,066431. https://doi.org/10.1101/066431 ID - ref43 ER - TY - BOOK AU - Hartl, D. L. AU - Clark, A. G. PY - 1997 DA - 1997// TI - Principles of population genetics PB - Sinauer Associates CY - Sunderland ID - Hartl1997 ER - TY - STD TI - Mallet J. Gene flow. In insect movement: mechanisms and consequences. In: Woiwood IP, Reynolds DR, Thomas CD, editors. Proceedings of a symposium at the Royal Entomological Society. London: Wallingford, UK: CAB International; 2001. p. 337–360. ID - ref45 ER - TY - JOUR AU - Taylor, J. W. AU - Jacobson, D. J. AU - Fisher, M. C. PY - 1999 DA - 1999// TI - The evolution of asexual fungi: reproduction, speciation and classification JO - Annu Rev Phytopathol VL - 37 UR - https://doi.org/10.1146/annurev.phyto.37.1.197 DO - 10.1146/annurev.phyto.37.1.197 ID - Taylor1999 ER - TY - JOUR AU - McDonald, B. A. AU - Linde, C. PY - 2002 DA - 2002// TI - Pathogen population genetics, evolutionary potential, and durable resistance JO - Annu Rev Phytopathol VL - 40 UR - https://doi.org/10.1146/annurev.phyto.40.120501.101443 DO - 10.1146/annurev.phyto.40.120501.101443 ID - McDonald2002 ER - TY - JOUR PY - 2010 DA - 2010// TI - The skill and style to model the evolution of resistance to pesticides and drugs JO - Evol Appl VL - 3 UR - https://doi.org/10.1111/j.1752-4571.2010.00124.x DO - 10.1111/j.1752-4571.2010.00124.x ID - ref48 ER - TY - JOUR AU - Leroy, T. AU - Le Cam, B. AU - Lemaire, C. PY - 2014 DA - 2014// TI - When virulence originates from non-agricultural hosts: new insights into plant breeding JO - Infect Genet Evol VL - 27 UR - https://doi.org/10.1016/j.meegid.2013.12.022 DO - 10.1016/j.meegid.2013.12.022 ID - Leroy2014 ER - TY - JOUR AU - Smith, J. M. AU - Haigh, J. PY - 1974 DA - 1974// TI - The hitch-hiking effect of a favourable gene JO - Genet Res VL - 23 UR - https://doi.org/10.1017/S0016672300014634 DO - 10.1017/S0016672300014634 ID - Smith1974 ER - TY - JOUR AU - Gladieux, P. PY - 2010 DA - 2010// TI - Zhang X G, Róldan-Ruiz I, Caffier V, Leroy T, Devaux M, van Glabeke S, Coart E, le cam B: evolution of the population structure of Venturia inaequalis, the apple scab fungus, associated with the domestication of its host JO - Mol Ecol VL - 19 UR - https://doi.org/10.1111/j.1365-294X.2009.04498.x DO - 10.1111/j.1365-294X.2009.04498.x ID - Gladieux2010 ER - TY - JOUR AU - Giraud, T. AU - Villaréal, L. M. AU - Austerlitz, F. AU - Le Gac, M. AU - Lavigne, C. PY - 2006 DA - 2006// TI - Importance of the life cycle in sympatric host race formation and speciation of pathogens JO - Phytopathology VL - 96 UR - https://doi.org/10.1094/PHYTO-96-0280 DO - 10.1094/PHYTO-96-0280 ID - Giraud2006 ER -