Table 1 70 avian genomes investigated in the study and those used in downstream analyses
Order | 70 avian genomes searched | 43 species with full-length CYP2J19 | 25 species used in comparative CYP analysis |
|---|---|---|---|
Struthioniformes | Struthio camelus (African ostrich) | ✓ | |
Apterygiformes | Apteryx australis (brown kiwi) | ||
Tinamiformes | Tinamus guttatus (white-throated tinamou) | ||
Galliformes | Colinus virginianus (northern bobwhite) | ||
Coturnix japonica (Japanese quail) | |||
Gallus gallus (red junglefowl) | ✓ | ✓ | |
Lyrurus tetrix (black grouse) | |||
Meleagris gallopavo (turkey) | |||
Anseriformes | Anas platyrhynchos (mallard) | ✓ | ✓ |
Anser cygnoides (swan goose) | ✓ | ✓ | |
Phoenicopteriformes | Phoenicopterus ruber (American flamingo) | ||
Podicipediformes | Podiceps cristatus (great-crested grebe) | ||
Columbiformes | Columba livia (rock pigeon) | ✓ | ✓ |
Mesitornithiformes | Mesitornis unicolor (brown roatelo) | ✓ | |
Pteroclidiformes | Pterocles gutturalis (yellow-throated sandgrouse) | ||
Apodiformes | Calypte anna (Anna’s hummingbird) | ✓ | |
Chaetura pelagica (chimney swift) | ✓ | ✓ | |
Caprimulgiformes | Caprimulgus carolinensis (chuck-will’s-widow) | ✓ | |
Cuculiformes | Cuculus canorus (common cuckoo) | ✓ | ✓ |
Otidiformes | Chlamydotis macqueenii (MacQueen’s bustard) | ||
Chlamydotis undulata (houbara bustard) | |||
Musophagiformes | Tauraco erythrolophus (red-crested turaco) | ✓ | |
Opisthocomiformes | Opisthocomus hoazin (hoatzin) | ✓ | ✓ |
Gruiformes | Balearica pavonina (black crowned crane) | ||
Balearica regulorum (grey crowned crane) | ✓ | ✓ | |
Charadriiformes | Calidris pugnax (ruff) | ||
Charadrius vociferous (killdeer) | ✓ | ||
Gaviiformes | Gavia stellate (red-throated loon) | ||
Procellariiformes | Fulmarus glacialis (northern fulmar) | ✓ | ✓ |
Sphenisciformes | Aptenodytes forsteri (emperor penguin) | ✓ | ✓ |
Pygoscelis adeliae (Adelie penguin) | |||
Suliformes | Phalacrocorax carbo (great cormorant) | ||
Pelecaniformes | Egretta garzetta (little egret) | ✓ | |
Nipponia nippon (crested ibis) | ✓ | ✓ | |
Pelecanus crispus (Dalmatian pelican) | |||
Eurypygiformes | Eurypyga helias (sunbittern) | ||
Phaethontiformes | Phaethon lepturus (white-tailed tropicbird) | ✓ | ✓ |
Cathartiformes | Cathartes aura (turkey vulture) | ||
Accipitriformes | Haliaeetus albicilla (white-tailed eagle) | ✓ | ✓ |
Haliaeetus leucocephalus (bald eagle) | |||
Aquila chrysaetos (golden eagle) | ✓ | ✓ | |
Strigiformes | Tyto alba (barn owl) | ||
Coliiformes | Colius striatus (speckled mousebird) | ✓ | ✓ |
Leptosomiformes | Leptosomus discolour (cuckoo roller) | ✓ | |
Trogoniformes | Apaloderma vittatum (bar-tailed trogon) | ✓ | |
Bucerotiformes | Buceros rhinoceros (rhinoceros hornbill) | ✓ | |
Coraciiformes | Merops nubicus (northern carmine bee-eater) | ||
Piciformes | Picoides pubescens (downy woodpecker) | ✓ | ✓ |
Cariamiformes | Cariama cristata (red-legged seriema) | ✓ | |
Falconiformes | Falco cherrug (saker falcon) | ✓ | ✓ |
Falco peregrinus (peregrine falcon) | ✓ | ✓ | |
Psittaciformes | Amazona aestiva (blue-fronted amazon) | ||
Amazona vittata (Puerto Rican parrot) | |||
Ara macao (scarlet macaw) | |||
Melopsittacus undulatus (budgerigar) | ✓ | ✓ | |
Nestor notabilis (kea) | ✓ | ||
Passeriformes | Acanthisitta chloris (rifleman) | ✓ | |
Corvus brachyrhynchos (American crow) | |||
Corvus cornix (hooded crow) | ✓ | ✓ | |
Ficedula albicollis (collared flycatcher) | ✓ | ✓ | |
Geospiza fortis (medium ground-finch) | ✓ | ✓ | |
Manacus vitellinus (golden-collared manakin) | ✓ | ||
Parus major (great tit) | ✓ | ||
Phylloscopus plumbeitarsus (two-barred warbler) | |||
Pseudopodoces humilis (Tibetan ground-tit) | ✓ | ✓ | |
Serinus canaria (common canary) | ✓ | ✓ | |
Sturnus vulgaris (common starling) | ✓ | ||
Taeniopygia guttata (zebra finch) | ✓ | ✓ | |
Zonotrichia albicollis (white-throated sparrow) | ✓ | ||
Zosterops lateralis (silver-eye) | ✓ |