Table 2 Estimated demographic parameters with IMa2
From: Evidence for late Pleistocene origin of Astyanax mexicanus cavefish
Populations | p0 – p1 O1 –S3 | p0 – p1 O6 –S3 | p0 – p1 O8 –S3 | p0 – p1 O1 –O6 | p0 – p1 O1 –O8 | p0 – p1 N1 –S1 | p0 – p1 N2 –S2 | p0 – p1 N3 –S4 | |
|---|---|---|---|---|---|---|---|---|---|
Ne p0 | HiPt | 150 | 50 | 250 | 250 | 250 | 150 | 850 | 450 |
HPD 95% | [150–1150] | [0–950] | [150–1250] | [150–1250] | [150–1150] | [0–950] | [350–1850] | [250–1650] | |
Ne p1 | HiPt | 10,750 | 6950 | 5850 | 350 | 550 | 10,550 | 3850 | 6950 |
HPD 95% | [6650–16,350] | [2150–83,150] | [1950–60,350] | [150–1350] | [150–1550] | [6050–15,950] | [2150–6950] | [1550–14,350] | |
Ne ancestral | HiPt | 44,850 | 31,250 | 42,450 | 24,050 | 26,650 | 47,050 | 37,950 | 43,350 |
HPD 95% | [32,350–73,250] | [19,850–49,650] | [28,750–62,650] | [11,950–50,750] | [14,150–44,150] | [28,950–81,550] | [25,250–65,350] | [20,350–69,150] | |
t | HiPt | 5110 | 3682 | 798 | 2540 | 1274 | 10,150 | 4074 | 770 |
HPD 95% | [1302–18,214] | [350–13,874] | [30–8302] | [860–5980] | [266–2422] | [2002–24,990] | [1834–10,626] | [406–17,234] | |
m1- > 0 | HiPt | 8.5 × 10− 4 | 12.8 × 10− 4 | 11.2 × 10− 4 | 8.6 × 10− 4 | 3.4 × 10− 4 | 4.9 × 10− 4 | 3.0 × 10− 4 | 29.0 × 10− 4 |
HPD 95% | [4.4–21.2 × 10− 4] | [4.7–89.0 × 10− 4] | [6.4–50.0 × 10− 4] | [0.5–24.5 × 10− 4] | [0.0–8.7 × 10− 4] | [1.0–15.2 × 10− 4] | [0.0–8.3 × 10− 4] | [9.0–57.2 × 10− 4] | |
m0- > 1 | HiPt | 6.5 × 10− 4 | 1.0 × 10–4 | 7.93 × 10− 4 | 2.5 × 10− 6 | 4.3 × 10− 4 | 5.0 × 10− 6 | 1.5 × 10− 6 | 10.2 × 10− 4 |
HPD 95% | [0.0–1.5 × 10− 4] | [0.0–11.2 × 10− 4] | [1.3–10.7 × 10− 4] | [0.0–8.5 × 10− 4] | [0.0–10.1 × 10− 4] | [0.0–1.3 × 10− 4] | [0.0–1.8 × 10− 4] | [3.8–17.2 × 10− 4] |