From: Emergence of the Asian lineage dengue virus type 3 genotype III in Malaysia
Dataset | Codon | SLAC | FEL | IFEL | MEME | FUBAR | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
dN-dS | p-value | dN-dS | p-value | dN-dS | p-value | ω+ | p-value | dN-dS | Post. Pr. | ||
PrM (n = 239) | 34 | −0.1076 | 0.7553 | 0.0259 | 0.9761 | −0.7189 | 0.3047 | > 100 | 0.0072 | −0.0217 | 0.4180 |
49 | −2.6595 | 0.8733 | −1.1322 | 0.3360 | − 1.7419 | 0.0866 | > 100 | 0.0172 | −0.1367 | 0.2155 | |
ENV (n = 413) | 132 | 3.9013 | 0.0459 | 3.5956 | 0.0011 | 2.3190 | 0.0265 | > 100 | 0.0123 | 1.0099 | 0.9926 |
169 | 1.4647 | 0.2964 | 0.7594 | 0.1001 | 0.0000 | 1.0000 | > 100 | 0.0002 | 0.1242 | 0.7448 | |
329 | 4.8826 | 0.0385 | 2.1726 | 0.2442 | 3.9530 | 0.1060 | 5.7227 | 0.0488 | 0.9124 | 0.9587 | |
380 | 2.4094 | 0.1406 | 1.4397 | 0.0272 | 1.5090 | 0.0486 | > 100 | 0.1017 | 0.2447 | 0.8887 | |
404 | −1.7093 | 0.9383 | −1.0008 | 0.2073 | −1.2489 | 0.0955 | > 100 | 0.0003 | −0.3071 | 0.0592 | |
NS1 (n = 364) | 17 | −4.4925 | 0.9670 | −0.2710 | 0.7483 | −1.0741 | 0.1907 | > 100 | 0.0000 | −0.1041 | 0.2427 |
178 | 2.0170 | 0.4206 | −0.0837 | 0.9395 | 0.9296 | 0.5599 | > 100 | 0.0268 | 0.0040 | 0.4414 | |
NS2a (n = 314) | 210 | 5.7384 | 0.1322 | 3.0481 | 0.0176 | 1.7719 | 0.1963 | 4.0752 | 0.2027 | 0.7751 | 0.9886 |
NS2b (n = 193) | 73 | −4.7928 | 0.9710 | −1.2591 | 0.2573 | −1.9587 | 0.0990 | > 100 | 0.0109 | −0.1473 | 0.1410 |
104 | −0.7126 | 0.7272 | −0.9021 | 0.3749 | −1.7010 | 0.1328 | 71.8889 | 0.0314 | −0.0798 | 0.2094 | |
NS3 (n = 435) | 278 | −6.2702 | 0.9997 | −2.1476 | 0.0550 | −2.6032 | 0.0536 | > 100 | 0.0140 | −0.8322 | 0.0130 |
338 | 3.1369 | 0.0958 | 2.5345 | 0.0291 | 2.2087 | 0.0703 | > 100 | 0.0401 | 0.5927 | 0.9305 | |
379 | −3.1511 | 0.9800 | −0.9745 | 0.3703 | −1.5012 | 0.1476 | > 100 | 0.0002 | −0.3206 | 0.1092 | |
NS4a (n = 205) | 15 | 3.9699 | 0.1877 | 0.6802 | 0.2249 | 1.6358 | 0.0839 | > 100 | 0.1013 | 0.0468 | 0.6667 |
NS5 (n = 472) | 616 | 3.8130 | 0.1317 | 1.3480 | 0.0316 | 1.4558 | 0.0514 | > 100 | 0.1057 | 0.2726 | 0.8640 |
629 | 3.9319 | 0.1246 | 1.1144 | 0.2054 | 1.2144 | 0.2130 | > 100 | 0.0487 | 0.1290 | 0.6829 | |
700 | 2.5290 | 0.9930 | 0.9094 | 0.9531 | 0.0000 | 1.0000 | > 100 | 0.0025 | −1.2759 | 0.3429 |