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Table 2 Parameters utilized for Bayesian inference of evolution of the GH9 and CBM49 domains

From: Origin, evolution, and divergence of plant class C GH9 endoglucanases

Site Model: Gamma
Subsitution rate = 1.0
Substitution model: WAG/ JTT
Gamma category count = 5
Shape: 1.537/ 0.813
Proportion invariant: NA/ 0.027
Clock Model: Relaxed clock Log Normal
Number of Discrete Rates = − 1
Clock rate = 1.0
Calibrated Yule model Birth rate = 1.0
Type (Full)
birthRate Model: Gamma
Initial = 1.0 [−∞, ∞]
α = 1.0E − 03 β = 1.0E + 03
Mode:= Shape Scale
Offset = 0.0
gammaShape Model: Gamma
Initial = 1.0 [−∞, ∞] α = 1.0E − 03 β = 1.0E + 03
Mode: Shape Scale
Offset = 0.0
Population mean Model: Exponential
Initial = 1.0 [−∞, ∞] μ = 10.0
Offset = 0.0
Uncorrelated relaxed local clock mean Model: Exponential Initial = 1.0 [−∞, ∞] μ = 10.0 Offset = 0.0
Uncorrelated relaxed local clock standard deviation Model: Exponential
Initial = 1.0 [−∞, ∞] σ = 0.3337
Offset = 0.0
Root Parent of: Bacteria/ Vascular class C land plants
Monophyletic
Model: Log Normal
μ = 8.2/ 5.41 σ = 0.07/ 0.055
Offset = 0.0
2.5% Quantile = 3170/ 201Mya
97.5% Quantile = 4180/ 249Mya
Markov chain monte carlo Chain length = 14,917,000 / 16,120,000
Pre Burnin = 4,200,000/ 2,130,000
Recording interval = 1000
  1. Abbreviations: GH9 Glycoside hydrolase 9, CBM49 Carbohydrate binding module 49, WAG Whelan and Goldman, JTT Jones, Taylor, and Thornton