From: Origin, evolution, and divergence of plant class C GH9 endoglucanases
Site | Model: Gamma |
Subsitution rate = 1.0 | |
Substitution model: WAG/ JTT | |
Gamma category count = 5 | |
Shape: 1.537/ 0.813 | |
Proportion invariant: NA/ 0.027 | |
Clock | Model: Relaxed clock Log Normal |
Number of Discrete Rates = − 1 | |
Clock rate = 1.0 | |
Calibrated Yule model | Birth rate = 1.0 |
Type (Full) | |
birthRate | Model: Gamma |
Initial = 1.0 [−∞, ∞] | |
α = 1.0E − 03 β = 1.0E + 03 | |
Mode:= Shape Scale | |
Offset = 0.0 | |
gammaShape | Model: Gamma |
Initial = 1.0 [−∞, ∞] α = 1.0E − 03 β = 1.0E + 03 | |
Mode: Shape Scale | |
Offset = 0.0 | |
Population mean | Model: Exponential |
Initial = 1.0 [−∞, ∞] μ = 10.0 | |
Offset = 0.0 | |
Uncorrelated relaxed local clock mean | Model: Exponential Initial = 1.0 [−∞, ∞] μ = 10.0 Offset = 0.0 |
Uncorrelated relaxed local clock standard deviation | Model: Exponential |
Initial = 1.0 [−∞, ∞] σ = 0.3337 | |
Offset = 0.0 | |
Root | Parent of: Bacteria/ Vascular class C land plants |
Monophyletic | |
Model: Log Normal | |
μ = 8.2/ 5.41 σ = 0.07/ 0.055 | |
Offset = 0.0 | |
2.5% Quantile = 3170/ 201Mya | |
97.5% Quantile = 4180/ 249Mya | |
Markov chain monte carlo | Chain length = 14,917,000 / 16,120,000 |
Pre Burnin = 4,200,000/ 2,130,000 | |
Recording interval = 1000 |