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Table 4 Alignment based pattern analysis of CBM49 in putative and characterized class C GH9 endoglucanases

From: Origin, evolution, and divergence of plant class C GH9 endoglucanases

  Motif Fs Sm Rm
1 GPIWGLTK[AS]G[DN]SY[GTV]FP[EST][HW][IL][NS][ST]L[APS][AV]GKS[LM]EFVYIH[AS][AT]S 140.4529 5 2.47E-35
2 GPIWGL[ST][KR]SG[DN]S[FY][AGT][FL]P[EST][HW][ILM]x[ST]Lx[AS]GKSLEFVYIH[AS][AT][ST] 131.0036 10 3.02E-32
3 GPIWGL[NST]x(2)[GP][DENQ]x(2)[AGTV] 75.6634 15 7.32E-04
4 GPIWGL[ST]x(2)[GP][DEN]x(2)[AGTV]x[PV]x(4)[STV]x(3)[GQ]x[GS]xE[FV][NV][FY][IV][HY][ASTV][AQT][GPST] 35.2349 20 5.86E-16
5 GPIWG[LV][NST]x[AST][GP][DENQT]x(2)[AGSTV] 36.2141 25 4.10E-04
6 GPIWG[LV][ANST]x(2)[GP][DENQT]x(2)[AGSTV] 33.2127 30 2.92E-03
7 GPI[WY]G[LV][ANST]x(3)[DENQT]x(2)[ADGSTV] 28.9138 35 1.00E-01
8 GP[IL]WGL[ANST]x(3)[ADEGNQ] 28.034 40 0.16
9 GP[IL]WG[LV][NST]x(3)[DENQT] 27.6347 45 0.14
10 GP[IL]WG[LV][AENST]x(3)[ADEGNQT] 26.4888 50 0.39
11 GP[IL][WY]G[LV][AENST]x(3)[ADEGNQT] 25.6627 55 1.4
12 GP[ILV][WY]G[LV][AENST] 23.5981 61 4.9
13 GP[ILV]xG[LV] 18.3557 65 356
14 G[NPS][IL][WY]G[LV][ANST] 22.9977 70 9.2
15 G[NPS][ILV]WG[LV] 20.977 77 15
16 G[NPS][ILV][WY]G[LV] 20.1508 80 53
17 G[DNPQS][ILV][WY]G[LV] 19.4127 85 83
18 G[DENPQST]x(2)G[LV] 12.9137 90 12,445
19 Gx[ILV][WY]G[LV] 17.5296 98 323
20 Gx(3)G[LV] 11.5238 100 33,184
  1. Abbreviations: Fs Fitness score, E Glutamic acid, Sm Number of sequences matched, Q Glutamine, Rm Estimated number of random matches, S Serine, A Alanine, T Threonine, L Leucine, C Cysteine, M Methionine, Y Tyrosine, I Isoleucine, F Phenylalanine, V Valine, W Tryptophan, G Glycine, K Lysine, D Aspartic acid, H Histidine, N Asparagine, P Proline, R Arginine, x Any amino acid