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Table 5 Distribution of sequence segments in classes A, B, and C plant GH9 endoglucanases

From: Origin, evolution, and divergence of plant class C GH9 endoglucanases

 

MEMSAT-SVM

DAS

PHOBIUS

 

SP

TM

SP

TM

SP

TM

C0 (NN)

0.0000 (0/97)

0.0588 (3/51)

0.0000 (0/100)

C1 (YY)

0.7525 (73/97)

1.0000 (97/97)

0.8604 (37/43)

0.8958 (43/48)

0.0000 (0/2)

0.0200 (2/100)

C2 (NY)

0.2474 (24/97)

0.1395 (6/43)

1.0000 (2/2)

B0 (NN)

0.0000 (0/75)

0.0196 (1/51)

0.0533 (4/75)

B1 (YY)

0.8133 (61/75)

1.0000 (75/75)

0.5600 (28/50)

0.9803 (50/51)

0.3333 (1/3)

0.0422 (3/71)

B2 (NY)

0.1866 (14/75)

0.4400 (22/50)

0.6667 (2/3)

A0 (NN)

0.0000 (0/22)

0.0454 (1/22)

0.0909 (2/22)

A1 (YY)

0.0000 (0/22)

1.0000 (22/22)

0.0000 (0/21)

0.9545 (21/22)

0.0000 (0/20)

0.9090 (20/22)

A2 (NY)

1.0000 (22/22)

1.0000 (21/21)

1.0000 (20/20)

  1. Abbreviations: SVM Support vector machine, SP Signal peptide, TM Transmembrane region, DAS Density alignment surface, YY (SP+) ∧ (TM ∨ PH ∨ RH)+, NY (SP−) ∧ (TM ∨ PH ∨ RH)+, NN (SP−) ∧ (TM ∨ PH ∨ RH)−