Skip to main content

Advertisement

Table 5 Distribution of sequence segments in classes A, B, and C plant GH9 endoglucanases

From: Origin, evolution, and divergence of plant class C GH9 endoglucanases

  MEMSAT-SVM DAS PHOBIUS
  SP TM SP TM SP TM
C0 (NN) 0.0000 (0/97) 0.0588 (3/51) 0.0000 (0/100)
C1 (YY) 0.7525 (73/97) 1.0000 (97/97) 0.8604 (37/43) 0.8958 (43/48) 0.0000 (0/2) 0.0200 (2/100)
C2 (NY) 0.2474 (24/97) 0.1395 (6/43) 1.0000 (2/2)
B0 (NN) 0.0000 (0/75) 0.0196 (1/51) 0.0533 (4/75)
B1 (YY) 0.8133 (61/75) 1.0000 (75/75) 0.5600 (28/50) 0.9803 (50/51) 0.3333 (1/3) 0.0422 (3/71)
B2 (NY) 0.1866 (14/75) 0.4400 (22/50) 0.6667 (2/3)
A0 (NN) 0.0000 (0/22) 0.0454 (1/22) 0.0909 (2/22)
A1 (YY) 0.0000 (0/22) 1.0000 (22/22) 0.0000 (0/21) 0.9545 (21/22) 0.0000 (0/20) 0.9090 (20/22)
A2 (NY) 1.0000 (22/22) 1.0000 (21/21) 1.0000 (20/20)
  1. Abbreviations: SVM Support vector machine, SP Signal peptide, TM Transmembrane region, DAS Density alignment surface, YY (SP+)  (TMPHRH)+, NY (SP)  (TMPHRH)+, NN (SP)  (TMPHRH)