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Table 1 Results of the IQ-TREE maximum likelihood phylogenetic analyses

From: Anchored phylogenomics illuminates the skipper butterfly tree of life

Analysis

Dataset

Data Type

Partitioning scheme

N. Partitions

Consensus LnL

A1

DT369

Nucleotides

None

1

−5115300.064

A2

DT369

Nucleotides

Locus

366

−5080057.834

A3 a

DT369

Nucleotides

PF

88

−5077543.916

A5

DT369

Amino Acids

None

1

−630708.956

A6

DT369

Amino Acids

Locus

366

−624687.178

A7

DT369

Amino Acids

PF

27

−627253.336

A1

DT393

Nucleotides

None

1

−5241440.350

A2

DT393

Nucleotides

Locus

393

−5204821.224

A3 a

DT393

Nucleotides

PF

94

−5203048.331

A5

DT393

Amino Acids

None

1

−662724.440

A6

DT393

Amino Acids

Locus

393

−656165.141

A7

DT393

Amino Acids

PF

28

−658908.662

  1. N. Partitions number of partitions, Consensus LnL log-likelihood of the consensus of all bootstrap trees, PF PartitionFinder
  2. athe two most likely scenarios for the two datasets