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Fig. 5 | BMC Evolutionary Biology

Fig. 5

From: Evolutionary diversity and novelty of DNA repair genes in asexual Bdelloid rotifers

Fig. 5

Ligase K. a Simplified phylogenetic tree of Ligase K with Ligase III as an outgroup; Adineta vaga Ligase K is in red. Clades with greater than 70% RAxML bootstrap support or 90% MrBayes posterior probability are marked with red and blue asterisks, respectively. Complete trees and species names and accession numbers of OTUs are available in Additional file 2. b Domain models of A. vaga Ligase K copies A1 and B1, with domain models of Ligase K peptides from other species (Mortierella verticillata KFH62561.1, Rhizophagus irregularis ESA15105.1, Capitella teleta ELT89513.1, Salpingoeca rosetta XP_004993722.1, Lottia gigantean XP_009061413.1, Aplysia californica XP_005100834.1, Blastopirellula marina WP_002650560.1, Tetrahymena thermophila XP_001011861.1). c) Comparison of A. vaga Ligase K PBZ domains with sequence logo of the Pfam model. d, e Dotplots generated with EMBOSS dotmatcher of copies B1 vs A1 and B1 to itself; lines along the diagonal indicate regions of similarity between the compares sequences. f Differential expression of A. vaga Ligase K ohnologs entering and recovering from desiccation, compared to hydrated controls. Values are log2 fold change of normalized counts, significance test values are listed in Additional file 1

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