Table 1 Genome databases, assembly versions and Hox scaffolds used in this study
From: Two more Posterior Hox genes and Hox cluster dispersal in echinoderms
Species | Phylum/Class | Genome version | Database | Hox cluster scaffold(s) | Hox11/13d scaffold(s) | Hox11/13e scaffold(s) | Citations |
|---|---|---|---|---|---|---|---|
Anneissia japonica | Echinodermata / Crinoidea | unassembled reads | NCBI SRA | N/A | N/A | N/A | None |
Lytechinus variegatus | Echinodermata / Echinoidea | 2.2 | Echinobase | 2296, 638, 378, 5296, 1336, 14,399, 33,366, 12,176, 234,558, 41,337, 1680 | 9600 | 2271 | None |
Strongylocentrotus purpuratus | Echinodermata / Echinoidea | 4.2 | Echinobase | 628 | 1168 | 182 | 5 |
Acanthaster planci | Echinodermata / Asteroidea | 1.0 | NCBI genomes | 15 | 8 | 22 | 10 |
Patiria miniata | Echinodermata / Asteroidea | 2.0 | Echinobase | 2763, 4440, 5928, 12,174, 1848, 3114 | 11,036 | 7732 | None |
Apostichopus japonicus | Echinodermata / Holothuroidea | 1.0 from [12] | Genedatabase.cn | 420 | 872 | 72 | 11, 12 |
Parastichopus parvimensis | Echinodermata / Holothuroidea | 1.0 | Echinobase | 391, 3188, 498, 1495, 4722, 3261, 5822, 317 | 4213 | 928 | None |
Ophiothrix spiculata | Echinodermata / Ophiuroidea | 1.0 (contigs) | Echinobase | 2313, 14,601, 543, 145, 887, 4941, 67,114, 5877, 10,227, 4461, 7983 | 764, 3374 | 21,026, 16,603 | None |
Ptychodera flava | Hemichordata / Enteropneusta | 3.0 | OIST | 4932_cov136 | N/A | N/A | 31 |
Saccoglossus kowalevskii | Hemichordata / Enteropneusta | 1.0 | NCBI genomes | 16,417, 1507, 26,913 | N/A | N/A | 31 |