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Table 2 Functional enrichment summary of protein-protein interaction network of proteins evolved with accelerated RSA change rate in Primata clade (based on GENEMANIA [55] data; see Fig. 6)

From: mtProtEvol: the resource presenting molecular evolution analysis of proteins involved in the function of Vertebrate mitochondria

Function

Heterotachy model, FDR

Heterotachy and Site partitioning models intersection, all data, FDR

All data

Protein structure-aware data

carboxylic acid catabolism

0.000188

2.53E-12

0.000269

organic acid catabolism

0.000188

2.53E-12

0.000269

small molecule catabolism

0.000812

2.32E-11

0.000768

fatty acid beta-oxidation

0.000812

1.46E-11

0.004036

alpha-amino acid metabolism

0.000888

0.000142

0.008642

monocarboxylic acid catabolism

0.00394

1.46E-11

0.009869

mitochondrial matrix

1.37E-14

3.24E-18

mitochondrial nucleoid

9E-06

6.57E-07

mitochondrial membrane

2.82E-06

9.28E-06

water-soluble vitamin metabolism

0.000812

4.74E-06

cellular respiration

5.87E-07

0.001263

mitochondrial inner membrane

0.000888

0.00178

carnitine transmembrane transport

0.003698

0.004036

amino-acid betaine transport

0.004428

0.004036

carnitine transport

0.004428

0.004036

cofactor metabolism

0.002887

0.006798

fatty acid transmembrane transport

0.005223

0.004663

quaternary ammonium group transport

0.00747

0.006053