From: In silico simulations of occurrence of transcription factor binding sites in bacterial genomes
Protein | Genome | Motif length | # of sites | Information content | ΔNgenome | ΔNig | ΔNcod | ΔNtem |
---|---|---|---|---|---|---|---|---|
AraC | E. coli | 17 | 15 | 12.1 | 4 | 6 | 0 | 1 |
ArcA | E. coli | 17 | 77 | 9.9 | 1 | 5 | 0 | 0 |
ArgP | E. coli | 18 | 16 | 11.3 | 2 | 3 | 2 | 0 |
ArgR | E. coli | 18 | 29 | 15.7 | 8 | 10 | 0 | 0 |
CpxR | E. coli | 14 | 58 | 9.0 | 2 | 3 | 1 | 0 |
Cra | E. coli | 16 | 42 | 14.7 | 2 | 14 | 0 | 0 |
Crp | E. coli | 22 | 260 | 11.3 | 28 | 55 | 1 | 3 |
CsgD | E. coli | 17 | 24 | 8.4 | 1 | 2 | 0 | 1 |
CytR | E. coli | 18 | 18 | 11.3 | 1 | 2 | 1 | 0 |
DnaA | E. coli | 11 | 14 | 13.0 | 0 | 8 | 0 | 0 |
FadR | E. coli | 18 | 16 | 15.6 | 5 | 12 | 0 | 2 |
Fis | E. coli | 15 | 214 | 6.9 | 0 | 3 | 0 | 0 |
FlhDC | E. coli | 16 | 16 | 12.8 | 2 | 13 | 1 | 0 |
Fnr | E. coli | 14 | 84 | 11.1 | 4 | 10 | 0 | 0 |
Fnr | R. sphaeroides | 14 | 27 | 17.1 | 18 | 38 | 0 | 1 |
Fur | E. coli | 18 | 48 | 15.8 | 9 | 27 | 1 | 1 |
GadW | E. coli | 20 | 17 | 14.5 | 1 | 5 | 0 | 0 |
GadX | E. coli | 21 | 24 | 11.3 | 2 | 5 | 0 | 0 |
GalR | E. coli | 15 | 12 | 16.3 | 3 | 9 | 0 | 2 |
GlpR | E. coli | 19 | 17 | 15.3 | 3 | 5 | 1 | 0 |
H-NS | E. coli | 13 | 48 | 8.2 | 0 | 0 | 0 | 1 |
IHF | E. coli | 13 | 95 | 8.4 | 0 | 4 | 0 | 3 |
LexA | C. difficile | 16 | 17 | 15.4 | 1 | 0 | 0 | 0 |
LexA | E. coli | 20 | 40 | 17.9 | 24 | 36 | 0 | 1 |
LexA | M. tuberculosis | 18 | 23 | 22.5 | 21 | 24 | 2 | 3 |
Lrp | E. coli | 15 | 80 | 7.1 | 0 | 3 | 0 | 1 |
MalT | E. coli | 10 | 15 | 12.0 | 0 | 3 | 0 | 0 |
MarA | E. coli | 19 | 23 | 12.4 | 2 | 6 | 0 | 0 |
MetJ | E. coli | 16 | 15 | 14.1 | 2 | 14 | 0 | 2 |
Nac | E. coli | 17 | 14 | 10.6 | 1 | 2 | 0 | 0 |
NagC | E. coli | 22 | 20 | 19.9 | 7 | 10 | 1 | 1 |
NarL | E. coli | 17 | 67 | 7.8 | 0 | 5 | 0 | 0 |
NsrR | E. coli | 14 | 39 | 12.2 | 0 | 1 | 0 | 0 |
NtrC | E. coli | 18 | 25 | 14.4 | 5 | 9 | 0 | 0 |
OmpR | E. coli | 19 | 20 | 13.5 | 3 | 4 | 0 | 1 |
OxyR | E. coli | 20 | 34 | 11.2 | 0 | 2 | 1 | 1 |
PhoB | E. coli | 22 | 24 | 13.4 | 4 | 9 | 1 | 0 |
PhoP | E. coli | 17 | 33 | 12.0 | 4 | 4 | 2 | 1 |
PurR | E. coli | 16 | 21 | 20.5 | 8 | 21 | 1 | 0 |
Rob | E. coli | 17 | 13 | 14.2 | 3 | 7 | 0 | 0 |
σ54 | S. enterica | 18 | 53 | 16.9 | 3 | 4 | 1 | 0 |
SoxS | E. coli | 18 | 27 | 12.5 | 3 | 7 | 0 | 0 |
TyrR | E. coli | 17 | 19 | 15.8 | 6 | 7 | 0 | 0 |