BMC Ecology and Evolution

Table 2 Intraspecific variation between two individuals of H. flavenscens and H. nujiangense

From: Evolution of plastid genomes of Holcoglossum (Orchidaceae) with recent radiation

Holcoglossum flavenscens				Holcoglossum nujiangense
Position	Varitation type	Location	Location type	Position	Varitation type	Location	Location type
895	G/A	psbA	coding	4271	Indel(3 bp)	trnK	IGS
9882	A/G	trnG	IGS*	8011	./T	psbK_psbI	IGS
10,370	T/C	trnR_atpA	IGS	20,023	A/G	rpoC2	coding
17,761	T/G	rpoC2	coding	21,021	A/C	rpoC1	coding
33,914	C/A	trnT_psbD	IGS	21,031	G/A	rpoC1	coding
36,702	A/C	trnS_psbZ	IGS	28,263	Indel(20 bp)	rpoB_trnC	IGS
43,116	C/T	psaA_ycf3	IGS	32,903	./A	trnE_trnT	IGS
49,010	C/A	trnL_trnF	IGS	33,559	A/G	trnT_psbD	IGS
49,020	Indel(28 bp)	trnL_trnF	IGS	33,845	Indel(19 bp)	trnT_psbD	IGS
49,378	Indel(57 bp)	trnF_trnV	IGS	49,670	Indel(36 bp)	trnF_trnV	IGS
49,514	Indel(14 bp)	trnF_trnV	IGS	56,132	G/T	rbcL_accD	IGS
49,981	C/A	trnV	IGS	79,512	T/C	rps8_rpl14	IGS
56,483	A/G	accD	coding	81,511	./T	rpl14_rps3	IGS
64,283	A/C	psbE_petL	IGS	111,832	Indel(10 bp)	ccsA_psaC	IGS
67,306	T/C	rpl20	coding	112,042	T/C	ccsA_psaC	IGS
69,392	T/.	clpP	IGS	119,788	G/A	ycf1	coding
73,253	G/A	psbB/psbT	IGS
73,948	A/G	psbH/petB	IGS
110,107	G/T	rpl32_trnL	IGS
112,694	A/C	ccsA_psaC	IGS
120,678	T/C	ycf1	coding

*IGS: Inter-Genic Sequence

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