Genetic diversity of the Thao people of Taiwan using Y-chromosome, mitochondrial DNA and HLA gene systems

Trejaut, Jean A.; Muyard, Frank; Lai, Ying-Hui; Chen, Lan-Rong; Chen, Zong-Sian; Loo, Jun-Hun; Huang, Jin-Yuan; Lin, Marie

doi:10.1186/s12862-019-1389-0

BMC Ecology and Evolution

Table 1 Gene Diversity in three gene systems (NRY, HLA, and mtDNA)

From: Genetic diversity of the Thao people of Taiwan using Y-chromosome, mitochondrial DNA and HLA gene systems

Populations				Gene Diversity
				Y chromosome		Mitochondrial DNA	HLA A,B and DRB1
				Y-SNP haplogroups ± SD	Y-STR haplotypes ± SD (7 STRs)	mtDNA Haplogroups ± SD	Aleles ± SD	Haplotypes ± SD
Sinitic speakers	East China	Fujian		0.849 ± 0.017	0.979 ± 0.006	0.990 ± 0.001	0.894 ± 0.022	0.997 ± 0.003
	Taiwan sinitic speaking groups	Taiwan mixed sample		0.887 ± 0.007	0.999 ± 0.000	0.990 ± 0.000	0.879 ± 0.022	0.992 ± 0.001
		Hakka		0.889 ± 0.020	0.985 ± 0.006	0.987 ± 0.002	0.892 ± 0.030	1.000 ± 0.002
		Minnan		0.886 ± 0.013	0.987 ± 0.006	0.990 ± 0.001	0.893 ± 0.016	0.996 ± 0.002
		All above		0.893 ± 0.006	0.983 ± 0.003	0.990 ± 0.001	0.882 ± 0.021	0.995 ± 0.001
		Pazeh (Pingpu)		0.689 ± 0.020	0.941 ± 0.014	0.977 ± 0.006	0.878 ± 0.023	0.990 ± 0.005
		Other Taiwan Plain tribes (Pingpu)		0.859 ± 0.008	0.994 ± 0.001	0.981 ± 0.001	0.833 ± 0.030	0.976 ± 0.004
Austronesian speakers	Taiwan Austronesian speaking groups (Formosan)	Northern Tribes	Atayal	0.177 ± 0.049	0.518 ± 0.060	0.886 ± 0.012	0.809 ± 0.044	0.966 ± 0.004
			Taroko	0.095 ± 0.062	0.447 ± 0.096	0.730 ± 0.025	0.813 ± 0.038	0.976 ± 0.004
			Saisiyat	0.229 ± 0.080	0.775 ± 0.039	0.869 ± 0.014	0.728 ± 0.064	0.958 ± 0.008
		Central tribes	Thao	0.227 ± 0.095	0.351 ± 0.010	0.894 ± 0.023	0.788 ± 0.058	0.939 ± 0.017
			Bunun	0.490 ± 0.025	0.886 ± 0.012	0.893 ± 0.008	0.768 ± 0.056	0.945 ± 0.014
			Tsou	0.181 ± 0.056	0.318 ± 0.014	0.920 ± 0.010	0.692 ± 0.078	0.918 ± 0.015
		Southern Tribes	Amis	0.669 ± 0.025	0.909 ± 0.024	0.910 ± 0.013	0.702 ± 0.067	0.909 ± 0.010
			Rukai	0.461 ± 0.060	0.905 ± 0.021	0.905 ± 0.012	0.686 ± 0.079	0.945 ± 0.014
			Paiwan	0.701 ± 0.029	0.909 ± 0.024	0.929 ± 0.005	0.634 ± 0.076	0.917 ± 0.017
			Puyuma	0.688 ± 0.048	0.968 ± 0.009	0.944 ± 0.005	0.785 ± 0.058	0.977 ± 0.006
			Yami	0.627 ± 0.040	0.834 ± 0.023	0.852 ± 0.009	0.711 ± 0.063	0.875 ± 0.019
		All TwMtA (no Thao)		0.603 ± 0.018	0.831 ± 0.017	0.965 ± 0.001	0.797 ± 0.010	0.979 ± 0.001
	Malayo-polynesian speaking groups	Batan (Ivatan)		0.726 ± 0.039	0.935 ± 0.018	0.923 ± 0.012	0.821 ± 0.037	0.963 ± 0.012
	Malayo-polynesian speaking groups	Philippines(no Batan)		0.893 ± 0.007	0.935 ± 0.018	0.952 ± 0.003	0.833 ± 0.023	0.998 ± 0.003

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ISSN: 2730-7182

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