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Table 1 Genetic diversity in Melarhaphe neritoides in the North East Atlantic

From: Highly polymorphic mitochondrial DNA and deceiving haplotypic differentiation: implications for assessing population genetic differentiation and connectivity

 

N

H

H p

H s

H w

L

S

Hd ± SD

π ± SD

Ï€ syn

Ï€ nonsyn

16S

399

145

112

33

3

486

106 (22%)

0.848 ± 0.001

0.004 ± 0.001

n/a

n/a

COI

399

309

277

32

3

614

200 (33%)

0.995 ± 0.001

0.018 ± 0.001

0.0725

0.0001

Cytb

399

328

293

35

6

675

230 (34%)

0.998 ± 0.001

0.016 ± 0.001

0.0657

0.0005

16S-COI-Cytb (dataset A)

 Total population

399

390

386

4

1

1775

536 (30%)

0.999 ± 0.001

0.013 ± 0.001

0.0686

0.0003

 FAI

42

42

42

0

0

1775

205 (12%)

1.000 ± 0.005

0.013 ± 0.001

0.0749

0.0003

 FLO

39

39

37

2

0

1775

183 (10%)

1.000 ± 0.006

0.012 ± 0.001

0.0620

0.0005

 PIC

37

36

34

3

1

1775

185 (10%)

0.998 ± 0.007

0.012 ± 0.001

0.0616

0.0003

 POR

38

38

37

2

0

1775

173 (10%)

1.000 ± 0.006

0.012 ± 0.001

0.0636

0.0003

 RHO

39

39

38

1

0

1775

187 (11%)

1.000 ± 0.006

0.013 ± 0.001

0.0661

0.0002

 SCO

18

17

15

4

0

1775

120 (7%)

0.993 ± 0.021

0.013 ± 0.001

0.0706

0.0000

 SM1

35

35

35

0

0

1775

210 (12%)

1.000 ± 0.007

0.013 ± 0.001

0.0673

0.0004

 SM2

37

37

36

1

0

1775

195 (11%)

1.000 ± 0.006

0.013 ± 0.001

0.0692

0.0001

 SM3

43

43

43

0

0

1775

239 (14%)

1.000 ± 0.005

0.014 ± 0.001

0.0728

0.0003

 SMA

32

32

32

0

0

1775

217 (12%)

1.000 ± 0.008

0.014 ± 0.001

0.0708

0.0005

 SPA

39

38

36

4

0

1775

183 (10%)

0.999 ± 0.006

0.014 ± 0.001

0.0729

0.0002

16S-COI-Cytb (dataset B)

 Total population

399

161

134

27

3

1429

191 (13%)

0.824 ± 0.001

0.001 ± 0.001

n/a

n/a

  1. Dataset A is the original hyperdiverse mtDNA dataset. Dataset B is the same, but with the most variable nucleotide sites removed (see text). N, number of individuals; H, number of haplotypes; Hp, number of private haplotypes; Hs, number of haplotypes shared among sampling sites; Hw, number of haplotypes shared within sampling site; L, DNA fragment length in base pairs; S, number of segregating sites (and in % of the fragment length); Hd, haplotype diversity ± standard deviation; π, Jukes-Cantor corrected nucleotide diversity ± standard deviation; πsyn, Jukes-Cantor corrected nucleotide diversity at synonymous sites; πnonsyn, Jukes-Cantor corrected nucleotide diversity at non-synonymous sites; n/a, not applicable. For the abbreviation of sampling site names, see Fig. 3