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Table 1 Summary of allelic diversity and tests of neutrality of LysM-RLKs in wild tomatoes

From: The evolutionary history of LysM-RLKs (LYKs/LYRs) in wild tomatoes

  No. Seqs No. Sites Haplotypes π all sites (non,syn,silent) πa/πs S MK p-value (uncorrected)
LYK1   1881      
 chil v ochr 17 v 1   13 0.0027 (0.0016, 0.0059, 0.0059) 0.28 19 0.062
 chil v lyco 17 v 1    0.0027 (0.0016, 0.0059, 0.0059) 0.28   0.026
 peru v ochr 17 v 1   15 0.0049 (0.0026, 0.0118, 0.0117) 0.22 43 0.185
 peru v lyco 17 v 1    0.0049 (0.0026, 0.0118, 0.0117) 0.22   0.146
LYK3   1992      
 chil v ochr 17 v 1   16 0.0046 (0.0011, 0.0160, 0.0159) 0.07 37 0.036
 chil v lyco 17 v 1    0.0046 (0.0011, 0.0152, 0.0151) 0.07   0.718
 peru v ochr 16 v 1   15 0.0056 (0.0008, 0.0211, 0.0209) 0.04 51 0.005
 peru v lyco 16 v 1    0.0056 (0.0008, 0.0215, 0.0214) 0.04   0.822
LYK4   1938      
 chil v ochr 15 v 1   15 0.0080 (0.0061, 0.0138, 0.0137) 0.44 51 0.510
 chil v lyco 15 v 1    0.0080 (0.0061, 0.0138, 0.0137) 0.44   0.760
 peru v ochr 16 v 1   16 0.0089 (0.0054, 0.0202, 0.0201) 0.26 80 0.275
 peru v lyco 16 v 1    0.0089 (0.0054, 0.0202, 0.0201) 0.26   0.336
LYK6   1599      
 chil v ochr 15 v 1   13 0.0151 (0.0119, 0.0246, 0.0246) 0.48 108 0.108
 chil v lyco 15 v 1    0.0151 (0.0119, 0.0245, 0.0245) 0.48   0.069
 peru v ochr 8 v 1   8 0.0161 (0.0135, 0.0244, 0.0244) 0.55 87 0.118
 peru v lyco 8 v 1    0.0161 (0.0135, 0.0244, 0.0244) 0.55   0.064
LYK8   1149      
 chil v ochr 13 v 1   12 0.0048 (0.0044, 0.0064, 0.0064) 0.69 34 0.025
 peru v ochr 17 v 1   16 0.0052 (0.0042, 0.0087, 0.0087) 0.47 55 0.026
LYK9   1890      
 chil v ochr 17 v 1   17 0.0073 (0.0042, 0.0174, 0.0176) 0.24 74 0.818
 chil v lyco 17 v 1    0.0073 (0.0042, 0.0174, 0.0176) 0.24 73 0.604
 peru v ochr 17 v 1   17 0.0068 (0.0045, 0.0135, 0.0146) 0.33 79 0.813
 peru v lyco 17 v 1    0.0068 (0.0045, 0.0174, 0.0146) 0.33 77 0.649
  1. Population samples were available for Solanum chilense (chil) and Solanum peruvianum (peru). Single allelic sequences from Solanum ochranthum (ochr) and Solanum lycopersicoides (lyco) were used for outgroup comparisons in the tests of neutrality. Haplotypes, the number of unique alleles in each population sample, apply to the first species listed in column 1, as do values for S, the number of segregating sites. The ratio of non-synonymous to synonymous average pairwise differences (πa/πs) was calculated for S. chilense and S. peruvianum. The McDonald-Kreitman test was applied to each pair of species listed in column 1. Uncorrected p-values for the McDonald-Kreitman analyses are reported, but following correction for multiple testing, none of the corrected p-values were below 5%