Table 1 References used for Whole Genome Shotgun data
| Â | Species | Ploidy of the genome sequence | Sample origin | BioProject/SRA code | Original publication |
|---|---|---|---|---|---|
Ingroup | Rosa ‘Old Blush’ | 1x | IRHS, Beaucouzé, France | – | [67] |
Rosa arvensis Huds. | 2x | Jardin expérimental de Colmar, Colmar, France | SRX3286288 | [67] | |
Rosa chinensis Jacq. var. spontanea (Rehd. & Wils.) T.T. Y & T. C. Ku | 2x | Roseraie du Val-de-Marne, L’ Hay-les-Roses, France | SRX4006790 | [67] | |
Rosa × damascena Mill. | 4x | Bulgaria | PRJNA322107 | – | |
Rosa gigantea Collet ex Crép | 2x | Lyon botanical garden, Lyon, France | SRX3286284, SRX3286283 | [66] | |
Rosa laevigata Michx. | 2x | Roseraie du Val-de-Marne, L’ Hay-les-Roses, France | SRX4006792 | [67] | |
Rosa majalis Herrm. | 2x | ENS Lyon, Lyon, France | SRX3286287 | [66] | |
Rosa minutifolia var. alba Engelm. | 2x | Roseraie du Val-de-Marne, L’ Hay-les-Roses, France | SRX4006787 | [67] | |
Rosa moschata Herrm. | 2x | Roses Loubert rose garden, Les Rosiers-sur-Loire, France | SRX4006793 | [67] | |
Rosa multiflora Thunb. ex Murr. | 2x | Keisei Rose Nurseries, Chiba, Japan | PRJDB4738 | [69] | |
Rosa odorata (Andr.) Sweet | 2x | Lyon botanical garden, Lyon, France | SRX3286293 | [66] | |
Rosa palustris Marsh. | 2x | NA | ERS1829481 | [70] | |
Rosa pendulina L | 2x | Lyon botanical garden, Lyon, France | SRX3286278 | [66] | |
Rosa persica Michx. ex Jussieu | 2x | Roses Loubert nurseries, Les Rosiers-sur-Loire, France | SRX4006789 | [67] | |
Rosa rugosa Thunb. | 2x | Roseraie du Val-de-Marne, L’ Hay-les-Roses, France | SRX4006791 | [67] | |
Rosa wichurana Crép | 2x | ILVO, Melle, Belgium | PRJNA504542 | – | |
Rosa xanthina var. xanthina f. spontanea Rehd. | 2x | Roses Loubert rose garden, Les Rosiers-sur-Loire, France | SRX4006788 | [67] | |
Outgroup | Fragaria vesca L. | 1x | NCGR, Corvallis, OR, USA | PRJNA66853 | [71] |
Fragaria iinumae Makino | 2x | Kagawa University, Kagawa, Japan | PRJDB1478 | [72] | |
Fragaria nipponica Makino | 2x | Kagawa University, Kagawa, Japan | PRJDB1479 | [72] | |
Fragaria nubicola Lindl. ex Lacaita | 2x | NCGR, Corvallis, OR, USA | PRJDB1480 | [72] | |
Geum urbanum L. | 2x | Punnets Town, UK | PRJEB23412 | [73] | |
Potentilla micrantha Ramond ex DC. | 6x | Avala, Serbia | PRJEB18433 | [74] | |
Rubus occidentalis L. | 2x | Rich Mountain, South Carolina, USA | – | [75] |