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Table 2 Description and primary function of SNPs with highest estimates of FST (> 0.44) and Dest (> 0.52) and/or excess ancestry based on bgc analyses

From: Evidence for adaptive introgression of exons across a hybrid swarm in deer

Gene

FST/Dest

bgc

Chromosomea

Description

Putative functionb

Synonymous mutation?

ANG2

 

x

10

Angiogenin 2

Nuclease activity

No

AP3B1

x

x

10

Adapter-related protein complex 3 beta 1

Cellular biogenesis; immune system

No

EIF4G3

x

x

2

Eukaryotic translation initiation factor 4 gamma 3

Transport

No

F9

x

 

X

Coagulation factor IX

Immune system

No

FUT8

x

x

10

Fucosyltransferase 8

Immune system

No

NLN

x

 

20

Neurolysin

Cell signalling

No

PLIN2

x

 

8

Perilipin-2

Metabolism

No

ROPN1L

x

 

20

Rhophilin associated tail protein 1 like

Reproduction

Yes

SCRG1

x

 

8

Scrapie-responsive protein 1

Immune system

No

TGFB3

x

x

10

Transforming growth factor beta 3

Cell development

No

TRPM3

 

x

8

Transient receptor potential cation channel subfamily M

Ion channel activity

Yes

  1. aChromosome based on the Bos taurus reference genome
  2. bGene function was based on NCBI gene report (http://www.ncbi.nlm.nih.gov)