Table 3 Clade Model Tests (CmC) for divergence partitioned by snakes phylogeny and by daily activity pattern
From: Characterization of the melanopsin gene (Opn4x) of diurnal and nocturnal snakes
Model | np | ln L | κ | Parameters | BIC |  | LRT | df | P |
|---|---|---|---|---|---|---|---|---|---|
M2_rel | 60 | −6417.6 | 3.38 | ω0 = 0.00 (p0 = 0.24); ω1 = 1.0 (p1 = 0.30); ω2 = 0.15 (p2 = 0.46) | 12,996.9 | – |  |  |  |
CmC: 4 part (phylo) | 63 | − 6399.2 | 3.36 | ω0 = 0.00 (p0 = 0.26); ω1 = 1.0 (p1 = 0.31); ω2 = 0.19 (p2 = 0.45); Hen: ω = 0.58; Vip: ω = 0.34; Elap: ω = 0.19; Col: ω = 0.03 (p = 0.44) | 12,968.2 | M2_rel | 36.8 | 3 | 0.000 |
3 part (phylo) | 5.36 | 1 | 0.021 | ||||||
3 part (D x N) | 11.7 | 1 | 0.001 | ||||||
2 part (phylo) | 16.9 | 2 | 0.000 | ||||||
CmC: 3 part (phylo) | 62 | − 6401.9 | 3.38 | ω0 = 0.03 (p0 = 0.4); ω1 = 1.0 (p1 = 0.3); Hen: ω = 0.84; Vip: ω = 0.5; Col+Elap: ω = 0.03 (p = 0.3) | 12,970.9 | M2_rel | 31.5 | 2 | 0.000 |
2 part (phylo) | 11.5 | 1 | 0.001 | ||||||
2 part (D x N) | 14.3 | 1 | 0.000 | ||||||
CmC: 2 part (phylo) | 61 | − 6407.6 | 1.75 | ω0 = 0.00 (p0 = 0.29); ω1 = 1.0 (p1 = 0.30); Hen: ω = 0.63; Caen: ω = 0.11 (p = 0.46) | 12,979.7 | M2_rel | 19.9 | 1 | 0.000 |
CmC 3 part (D x N) | 62 | − 6404.8 | 3.37 | ω0 = 0.00 (p0 = 0.26); ω1 = 1.0 (p1 = 0.29); Hen: ω2 = 0.56; N: ω = 0.2; D: ω = 0.06 (p = 0.45) | 12,977.3 | M2_rel | 25.1 | 2 | 0.000 |
2 part (phylo) | 5.7 | 1 | 0.017 | ||||||
2 part (D x N) | 7.7 | 1 | 0.004 | ||||||
CmC 2 part (D x N) | 61 | − 6408.9 | 3.38 | ω0 = 0.00 (p0 = 0.19); ω1 = 1.0 (p1 = 0.3); N: ω2 = 0.24; D: ω = 0.05 (p = 0.51) | 12,982.2 | M2_rel | 17.4 | 1 | 0.000 |