TY - JOUR AU - Kitching, I. AU - Rougerie, R. AU - Zwick, A. AU - St Laurent, R. AU - Ballesteros Mejia, L. AU - Kawahara, A. PY - 2018 DA - 2018// TI - A global checklist of the Bombycoidea (Insecta: Lepidoptera) JO - BDJ VL - 6 UR - https://doi.org/10.3897/BDJ.6.e22236 DO - 10.3897/BDJ.6.e22236 ID - Kitching2018 ER - TY - CHAP AU - Roe, A. D. AU - Weller, S. J. AU - Baixeras, J. AU - Brown, J. AU - Cummings, M. P. AU - Davis, D. R. ED - Goldsmith, M. ED - Marec, F. PY - 2010 DA - 2010// TI - Evolutionary framework for Lepidoptera model systems BT - Molecular biology and genetics of the Lepidoptera ID - Roe2010 ER - TY - JOUR AU - Gregory, D. PY - 1963 DA - 1963// TI - Hawkmoth pollination in the genus Oenothera JO - Aliso J Syst Evol Bot VL - 5 ID - Gregory1963 ER - TY - JOUR AU - Haber, W. A. AU - Frankie, G. W. PY - 1989 DA - 1989// TI - A tropical hawkmoth community- Costa Rican dry Forest Sphingidae JO - Biotropica VL - 21 UR - https://doi.org/10.2307/2388706 DO - 10.2307/2388706 ID - Haber1989 ER - TY - JOUR AU - Nilsson, L. A. AU - Jonsson, L. AU - Rason, L. AU - Randrianjohany, E. PY - 1985 DA - 1985// TI - Monophily and pollination mechanisms in Angraecum arachnites Schltr. (Orchidaceae) in a guild of long-tongued hawk-moths (Sphingidae) in Madagascar JO - Biol J Linn Soc VL - 26 UR - https://doi.org/10.1111/j.1095-8312.1985.tb01549.x DO - 10.1111/j.1095-8312.1985.tb01549.x ID - Nilsson1985 ER - TY - JOUR AU - Nilsson, L. A. AU - Rabakonandrianina, E. AU - Pettersson, B. PY - 1992 DA - 1992// TI - Exact tracking of pollen transfer and mating in plants JO - Nature VL - 360 UR - https://doi.org/10.1038/360666a0 DO - 10.1038/360666a0 ID - Nilsson1992 ER - TY - JOUR AU - Wasserthal, L. T. PY - 1997 DA - 1997// TI - The pollinators of the Malagasy star orchids Angraecum sesquipedale, A. sororium and A. compactum and the evolution of extremely long spurs by pollinator shift JO - Botanica Acta VL - 110 UR - https://doi.org/10.1111/j.1438-8677.1997.tb00650.x DO - 10.1111/j.1438-8677.1997.tb00650.x ID - Wasserthal1997 ER - TY - JOUR AU - Nilsson, L. A. PY - 1998 DA - 1998// TI - Deep flowers for long tongues JO - Trends Ecol Evol VL - 13 UR - https://doi.org/10.1016/S0169-5347(98)01359-7 DO - 10.1016/S0169-5347(98)01359-7 ID - Nilsson1998 ER - TY - JOUR AU - Raguso, R. A. AU - Willis, M. A. PY - 2002 DA - 2002// TI - Synergy between visual and olfactory cues in nectar feeding by naive hawkmoths, Manduca sexta JO - Anim Behav VL - 64 UR - https://doi.org/10.1006/anbe.2002.4010 DO - 10.1006/anbe.2002.4010 ID - Raguso2002 ER - TY - STD TI - Beck J, Kitching IJ, Linsenmair KE. Effects of habitat disturbance can be subtle yet significant: biodiversity of hawkmoth-assemblages (Lepidoptera: Sphingidae) in Southeast-Asia. In: Hawksworth DL, Bull AT. (eds) Arthropod Diversity and Conservation. Topics in Biodiversity and conservation, vol. 1. Dordrecht: Springer; 2006. ID - ref10 ER - TY - JOUR AU - Regier, J. C. AU - Cook, C. P. AU - Mitter, C. AU - Hussey, A. PY - 2008 DA - 2008// TI - A phylogenetic study of the “bombycoid complex” (Lepidoptera) using five protein-coding nuclear genes, with comments on the problem of macrolepidopteran phylogeny JO - Syst Entomol VL - 33 UR - https://doi.org/10.1111/j.1365-3113.2007.00409.x DO - 10.1111/j.1365-3113.2007.00409.x ID - Regier2008 ER - TY - JOUR AU - Meusemann, K. AU - Reumont, v. B. M. AU - Simon, S. AU - Roeding, F. AU - Strauss, S. AU - Kück, P. PY - 2010 DA - 2010// TI - A phylogenomic approach to resolve the arthropod tree of life JO - Mol Biol Evol VL - 27 UR - https://doi.org/10.1093/molbev/msq130 DO - 10.1093/molbev/msq130 ID - Meusemann2010 ER - TY - JOUR AU - Zwick, A. AU - Regier, J. C. AU - Mitter, C. AU - Cummings, M. P. PY - 2011 DA - 2011// TI - Increased gene sampling yields robust support for higher-level clades within Bombycoidea (Lepidoptera) JO - Syst Entomol VL - 36 UR - https://doi.org/10.1111/j.1365-3113.2010.00543.x DO - 10.1111/j.1365-3113.2010.00543.x ID - Zwick2011 ER - TY - JOUR AU - Kim, M. J. AU - Kang, A. R. AU - Jeong, H. C. AU - Kim, K. -. G. AU - Kim, I. PY - 2011 DA - 2011// TI - Reconstructing intraordinal relationships in Lepidoptera using mitochondrial genome data with the description of two newly sequenced lycaenids, Spindasis takanonis and Protantigius superans (Lepidoptera: Lycaenidae) JO - Mol Phylogenet Evol VL - 61 UR - https://doi.org/10.1016/j.ympev.2011.07.013 DO - 10.1016/j.ympev.2011.07.013 ID - Kim2011 ER - TY - JOUR AU - Minet, J. PY - 1994 DA - 1994// TI - The Bombycoidea: Phylogeny and higher classification (Lepidoptera, Glossata) JO - Entomologica Scandinavica VL - 25 UR - https://doi.org/10.1163/187631294X00045 DO - 10.1163/187631294X00045 ID - Minet1994 ER - TY - JOUR AU - Breinholt, J. W. AU - Earl, C. AU - Lemmon, A. R. AU - Lemmon, E. M. AU - Xiao, L. AU - Kawahara, A. Y. PY - 2018 DA - 2018// TI - Resolving relationships among the megadiverse butterflies and moths with a novel pipeline for anchored phylogenomics JO - Syst Biol VL - 67 UR - https://doi.org/10.1093/sysbio/syx048 DO - 10.1093/sysbio/syx048 ID - Breinholt2018 ER - TY - JOUR AU - Timmermans, M. J. T. N. AU - Lees, D. C. AU - Simonsen, T. J. PY - 2014 DA - 2014// TI - Towards a mitogenomic phylogeny of Lepidoptera JO - Mol Phylogenet Evol VL - 79 UR - https://doi.org/10.1016/j.ympev.2014.05.031 DO - 10.1016/j.ympev.2014.05.031 ID - Timmermans2014 ER - TY - JOUR AU - Wang, X. AU - Chen, Z. -. M. AU - Gu, X. -. S. AU - Wang, M. AU - Huang, G. -. H. AU - Zwick, A. PY - 2018 DA - 2018// TI - Phylogenetic relationships among Bombycidae s.l. (Lepidoptera) based on analyses of complete mitochondrial genomes JO - Syst Entomol VL - 20 ID - Wang2018 ER - TY - JOUR AU - Breinholt, J. W. AU - Kawahara, A. Y. PY - 2013 DA - 2013// TI - Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data JO - Genome Biol Evol VL - 5 UR - https://doi.org/10.1093/gbe/evt157 DO - 10.1093/gbe/evt157 ID - Breinholt2013 ER - TY - JOUR AU - Zwick, A. PY - 2008 DA - 2008// TI - Molecular phylogeny of Anthelidae and other bombycoid taxa (Lepidoptera: Bombycoidea) JO - Syst Entomol VL - 33 UR - https://doi.org/10.1111/j.1365-3113.2007.00410.x DO - 10.1111/j.1365-3113.2007.00410.x ID - Zwick2008 ER - TY - JOUR AU - Minet, J. PY - 1991 DA - 1991// TI - Tentative reconstruction of the ditrysian phylogeny (Lepidoptera, Glossata) JO - Entomologica Scandinavica VL - 22 UR - https://doi.org/10.1163/187631291X00327 DO - 10.1163/187631291X00327 ID - Minet1991 ER - TY - JOUR AU - Mutanen, M. AU - Wahlberg, N. AU - Kaila, L. PY - 2010 DA - 2010// TI - Comprehensive gene and taxon coverage elucidates radiation patterns in moths and butterflies JO - Proc Biol Sci VL - 277 UR - https://doi.org/10.1098/rspb.2010.0392 DO - 10.1098/rspb.2010.0392 ID - Mutanen2010 ER - TY - CHAP AU - Lemaire, C. AU - Minet, J. ED - Kristensen, N. P. PY - 1998 DA - 1998// TI - 18. The Bombycoidea and their relatives BT - Lepidoptera, Moths and Butterflies. vol. 1. Evolution, Systematics, and Biogeography. Handbook of Zoology PB - Walter de Gruyter CY - Berlin ID - Lemaire1998 ER - TY - JOUR AU - Regier, J. C. AU - Mitter, C. AU - Zwick, A. AU - Bazinet, A. L. AU - Cummings, M. P. AU - Kawahara, A. Y. PY - 2013 DA - 2013// TI - A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies) JO - PLoS ONE VL - 8 UR - https://doi.org/10.1371/journal.pone.0058568 DO - 10.1371/journal.pone.0058568 ID - Regier2013 ER - TY - JOUR AU - Regier, J. C. AU - Zwick, A. AU - Cummings, M. P. AU - Kawahara, A. Y. AU - Cho, S. AU - Weller, S. PY - 2009 DA - 2009// TI - Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC evolutionary biology JO - BioMed Central VL - 9 UR - https://doi.org/10.1186/1471-2458-9-280 DO - 10.1186/1471-2458-9-280 ID - Regier2009 ER - TY - JOUR AU - Espeland, M. AU - Breinholt, J. AU - Willmott, K. R. AU - Warren, A. D. AU - Vila, R. AU - Toussaint, E. F. A. PY - 2018 DA - 2018// TI - A comprehensive and dated phylogenomic analysis of butterflies JO - CURBIO VL - 28 ID - Espeland2018 ER - TY - JOUR AU - Johns, C. A. AU - Toussaint, E. F. A. AU - Breinholt, J. W. AU - Kawahara, A. Y. PY - 2018 DA - 2018// TI - Origin and macroevolution of micro-moths on sunken Hawaiian islands JO - Proc Biol Sci VL - 285 UR - https://doi.org/10.1098/rspb.2018.1047 DO - 10.1098/rspb.2018.1047 ID - Johns2018 ER - TY - JOUR AU - St Laurent, R. A. AU - Hamilton, C. A. AU - Kawahara, A. Y. PY - 2018 DA - 2018// TI - Museum specimens provide phylogenomic data to resolve relationships of sack-bearer moths (Lepidoptera, Mimallonoidea, Mimallonidae) JO - Syst Entomol VL - 43 UR - https://doi.org/10.1111/syen.12301 DO - 10.1111/syen.12301 ID - St Laurent2018 ER - TY - JOUR AU - Toussaint, E. F. A. AU - Breinholt, J. W. AU - Earl, C. AU - Warren, A. D. AU - Brower, A. V. Z. AU - Yago, M. PY - 2018 DA - 2018// TI - Anchored phylogenomics illuminates the skipper butterfly tree of life JO - BMC Evol Biol VL - 18 UR - https://doi.org/10.1186/s12862-018-1216-z DO - 10.1186/s12862-018-1216-z ID - Toussaint2018 ER - TY - JOUR AU - Rubin, J. u. l. i. e. t. t. e. J. AU - Hamilton, C. h. r. i. s. A. AU - McClure, C. h. r. i. s. J. W. AU - Chadwell, B. r. a. d. A. AU - Kawahara, A. k. i. t. o. Y. AU - Barber, J. e. s. s. e. R. PY - 2018 DA - 2018// TI - The evolution of anti-bat sensory illusions in moths JO - Science Advances VL - 4 UR - https://doi.org/10.1126/sciadv.aar7428 DO - 10.1126/sciadv.aar7428 ID - Rubin2018 ER - TY - JOUR AU - Lemmon, A. R. AU - Emme, S. A. AU - Lemmon, E. M. PY - 2012 DA - 2012// TI - Anchored hybrid enrichment for massively high-throughput phylogenomics JO - Syst Biol VL - 61 UR - https://doi.org/10.1093/sysbio/sys049 DO - 10.1093/sysbio/sys049 ID - Lemmon2012 ER - TY - JOUR AU - Regier, J. C. AU - Grant, M. C. AU - Mitter, C. AU - Cook, C. P. AU - Peigler, R. S. AU - Rougerie, R. PY - 2008 DA - 2008// TI - Phylogenetic relationships of wild silkmoths (Lepidoptera: Saturniidae) inferred from four protein-coding nuclear genes JO - Syst Entomol VL - 33 UR - https://doi.org/10.1111/j.1365-3113.2007.00416.x DO - 10.1111/j.1365-3113.2007.00416.x ID - Regier2008 ER - TY - JOUR AU - Barber, J. R. AU - Kawahara, A. Y. PY - 2013 DA - 2013// TI - Hawkmoths produce anti-bat ultrasound JO - Biol Lett VL - 9 UR - https://doi.org/10.1098/rsbl.2013.0161 DO - 10.1098/rsbl.2013.0161 ID - Barber2013 ER - TY - JOUR AU - Kawahara, A. Y. AU - Barber, J. R. PY - 2015 DA - 2015// TI - Tempo and mode of antibat ultrasound production and sonar jamming in the diverse hawkmoth radiation JO - Proc Natl Acad Sci VL - 112 UR - https://doi.org/10.1073/pnas.1416679112 DO - 10.1073/pnas.1416679112 ID - Kawahara2015 ER - TY - JOUR AU - Barber, J. R. AU - Leavell, B. C. AU - Keener, A. L. AU - Breinholt, J. W. AU - Chadwell, B. A. AU - McClure, C. J. W. PY - 2015 DA - 2015// TI - Moth tails divert bat attack: evolution of acoustic deflection. Proceedings of the National Academy of Sciences JO - Natl Acad Sci VL - 112 UR - https://doi.org/10.1073/pnas.1421926112 DO - 10.1073/pnas.1421926112 ID - Barber2015 ER - TY - JOUR AU - Janzen, D. PY - 1984 DA - 1984// TI - Two ways to be a tropical big moth: Santa Rosa saturniids and sphingids JO - Oxf Surv Evol Biol VL - 1 ID - Janzen1984 ER - TY - JOUR AU - Tammaru, T. AU - Haukioja, E. PY - 1996 DA - 1996// TI - Capital breeders and income breeders among Lepidoptera: consequences to population dynamics JO - Oikos VL - 77 UR - https://doi.org/10.2307/3545946 DO - 10.2307/3545946 ID - Tammaru1996 ER - TY - JOUR AU - Kawahara, A. Y. AU - Breinholt, J. W. PY - 2014 DA - 2014// TI - Phylogenomics provides strong evidence for relationships of butterflies and moths JO - P Roy Soc B-Biol Sci VL - 281 UR - https://doi.org/10.1098/rspb.2014.0970 DO - 10.1098/rspb.2014.0970 ID - Kawahara2014 ER - TY - JOUR AU - Jones, K. E. AU - Bininda-Emonds, O. R. P. AU - Gittleman, J. L. PY - 2005 DA - 2005// TI - Bats, clocks, and rocks: diversification patterns in Chiroptera JO - Evolution. VL - 59 UR - https://doi.org/10.1111/j.0014-3820.2005.tb00932.x DO - 10.1111/j.0014-3820.2005.tb00932.x ID - Jones2005 ER - TY - JOUR AU - Teeling, E. C. AU - Springer, M. S. AU - Madsen, O. AU - Bates, P. AU - O'Brien, S. J. AU - Murphy, W. J. PY - 2005 DA - 2005// TI - A molecular phylogeny for bats illuminates biogeography and the fossil record JO - Science VL - 307 UR - https://doi.org/10.1126/science.1105113 DO - 10.1126/science.1105113 ID - Teeling2005 ER - TY - JOUR AU - Miller-Butterworth, C. M. AU - Murphy, W. J. AU - O'Brien, S. J. AU - Jacobs, D. S. AU - Springer, M. S. AU - Teeling, E. C. PY - 2007 DA - 2007// TI - A family matter: conclusive resolution of the taxonomic position of the long-fingered bats, Miniopterus JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm076 DO - 10.1093/molbev/msm076 ID - Miller-Butterworth2007 ER - TY - JOUR AU - Shi, J. J. AU - Rabosky, D. L. PY - 2015 DA - 2015// TI - Speciation dynamics during the global radiation of extant bats JO - Evolution VL - 69 UR - https://doi.org/10.1111/evo.12681 DO - 10.1111/evo.12681 ID - Shi2015 ER - TY - JOUR AU - Lei, M. AU - Dong, D. PY - 2016 DA - 2016// TI - Phylogenomic analyses of bat subordinal relationships based on transcriptome data JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep27726 DO - 10.1038/srep27726 ID - Lei2016 ER - TY - JOUR AU - Barber, J. R. AU - Conner, W. E. PY - 2007 DA - 2007// TI - Acoustic mimicry in a predator-prey interaction JO - P Natl Acad Sci Usa VL - 104 UR - https://doi.org/10.1073/pnas.0703627104 DO - 10.1073/pnas.0703627104 ID - Barber2007 ER - TY - JOUR AU - Xia, Q. AU - Zhou, Z. AU - Lu, C. AU - Cheng, D. AU - Dai, F. AU - Li, B. PY - 2004 DA - 2004// TI - A draft sequence for the genome of the domesticated silkworm (Bombyx mori) JO - Science VL - 306 UR - https://doi.org/10.1126/science.1102210 DO - 10.1126/science.1102210 ID - Xia2004 ER - TY - STD TI - Breinholt JW, Earl C, Lemmon AR, Lemmon EM, Xiao L, from KAYD. Resolving relationships among the megadiverse butterflies and moths with a novel pipeline for anchored Phylogenomics. Dryad Digital Repository. 2017. https://doi.org/10.5061/dryad.rf7g5.2. ID - ref46 ER - TY - JOUR AU - Stamatakis, A. PY - 2014 DA - 2014// TI - RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu033 DO - 10.1093/bioinformatics/btu033 ID - Stamatakis2014 ER - TY - JOUR AU - Mayrose, I. AU - Graur, D. AU - Ben-Tal, N. AU - Pupko, T. PY - 2004 DA - 2004// TI - Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior JO - Mol Biol Evol VL - 21 UR - https://doi.org/10.1093/molbev/msh194 DO - 10.1093/molbev/msh194 ID - Mayrose2004 ER - TY - BOOK AU - Pond, S. L. K. AU - Frost, S. D. W. AU - Muse, S. V. PY - 2005 DA - 2005// TI - HyPhy: hypothesis testing using phylogenies PB - Springer CY - New York ID - Pond2005 ER - TY - JOUR AU - López-Giráldez, F. AU - Townsend, J. P. PY - 2011 DA - 2011// TI - PhyDesign: an online application for profiling phylogenetic informativeness JO - BMC Evol Biol VL - 11 UR - https://doi.org/10.1186/1471-2148-11-152 DO - 10.1186/1471-2148-11-152 ID - López-Giráldez2011 ER - TY - BOOK AU - Heibl, C. PY - 2013 DA - 2013// TI - PHYLOCH: R language tree plotting tools and interfaces to diverse phylogenetic software packages ID - Heibl2013 ER - TY - JOUR AU - Paradis, E. AU - Claude, J. AU - Strimmer, K. PY - 2004 DA - 2004// TI - APE: analyses of phylogenetics and evolution in R language JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg412 DO - 10.1093/bioinformatics/btg412 ID - Paradis2004 ER - TY - JOUR AU - Kawahara, A. Y. AU - Plotkin, D. AU - Hamilton, C. A. PY - 2018 DA - 2018// TI - Diel behavior in moths and butterflies: a synthesis of data illuminates the evolution of temporal activity JO - Org Divers Evol. VL - 18 UR - https://doi.org/10.1007/s13127-017-0350-6 DO - 10.1007/s13127-017-0350-6 ID - Kawahara2018 ER - TY - JOUR AU - Cho, S. AU - Epstein, S. W. AU - Mitter, K. AU - Hamilton, C. A. AU - Plotkin, D. AU - Mitter, C. PY - 2016 DA - 2016// TI - Preserving and vouchering butterflies and moths for large-scale museum-based molecular research JO - PeerJ VL - 4 UR - https://doi.org/10.7717/peerj.2160 DO - 10.7717/peerj.2160 ID - Cho2016 ER - TY - JOUR AU - Blaimer, B. B. AU - Lloyd, M. W. AU - Guillory, W. X. AU - Brady, S. G. PY - 2016 DA - 2016// TI - Sequence capture and phylogenetic utility of genomic Ultraconserved elements obtained from pinned insect specimens JO - PLoS ONE VL - 11 UR - https://doi.org/10.1371/journal.pone.0161531 DO - 10.1371/journal.pone.0161531 ID - Blaimer2016 ER - TY - JOUR AU - Mikheyev, A. S. AU - Zwick, A. AU - Magrath, M. J. L. AU - Grau, M. L. AU - Qiu, L. AU - Su, Y. N. PY - 2017 DA - 2017// TI - Museum genomics confirms that the Lord Howe Island stick insect survived extinction JO - CURBIO VL - 27 ID - Mikheyev2017 ER - TY - JOUR AU - Ruane, S. AU - Austin, C. C. PY - 2017 DA - 2017// TI - Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens JO - Molecular Ecology Resources VL - 17 UR - https://doi.org/10.1111/1755-0998.12655 DO - 10.1111/1755-0998.12655 ID - Ruane2017 ER - TY - JOUR AU - Larsson, A. n. d. e. r. s. PY - 2014 DA - 2014// TI - AliView: a fast and lightweight alignment viewer and editor for large datasets JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu531 DO - 10.1093/bioinformatics/btu531 ID - Larsson2014 ER - TY - JOUR AU - Kück, P. AU - Longo, G. C. PY - 2014 DA - 2014// TI - FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies JO - Front Zool VL - 11 ID - Kück2014 ER - TY - JOUR AU - Nguyen, L. -. T. AU - Schmidt, H. A. AU - Haeseler, v. A. AU - Minh, B. Q. PY - 2015 DA - 2015// TI - IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies JO - Mol Biol Evol VL - 32 UR - https://doi.org/10.1093/molbev/msu300 DO - 10.1093/molbev/msu300 ID - Nguyen2015 ER - TY - JOUR AU - Minh, B. Q. AU - Nguyen, M. A. T. AU - Haeseler, v. A. PY - 2013 DA - 2013// TI - Ultrafast approximation for phylogenetic bootstrap JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mst024 DO - 10.1093/molbev/mst024 ID - Minh2013 ER - TY - JOUR AU - Guindon, S. AU - Dufayard, J. -. F. AU - Lefort, V. AU - Anisimova, M. AU - Hordijk, W. AU - Gascuel, O. PY - 2010 DA - 2010// TI - New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 JO - Syst Biol VL - 59 UR - https://doi.org/10.1093/sysbio/syq010 DO - 10.1093/sysbio/syq010 ID - Guindon2010 ER - TY - JOUR AU - Mendes, F. K. AU - Hahn, M. W. PY - 2017 DA - 2017// TI - Why concatenation fails near the anomaly zone JO - Syst Biol VL - 67 UR - https://doi.org/10.1093/sysbio/syx063 DO - 10.1093/sysbio/syx063 ID - Mendes2017 ER - TY - JOUR AU - Maddison, W. PY - 1997 DA - 1997// TI - Gene trees in species trees JO - Syst Biol VL - 46 UR - https://doi.org/10.1093/sysbio/46.3.523 DO - 10.1093/sysbio/46.3.523 ID - Maddison1997 ER - TY - JOUR AU - Slowinski, J. AU - Page, R. PY - 1999 DA - 1999// TI - How should species phylogenies be inferred from sequence data? JO - Syst Biol VL - 48 UR - https://doi.org/10.1080/106351599260030 DO - 10.1080/106351599260030 ID - Slowinski1999 ER - TY - JOUR AU - Edwards, S. V. PY - 2009 DA - 2009// TI - Is a new and general theory of molecular systematics emerging? JO - Evolution VL - 63 UR - https://doi.org/10.1111/j.1558-5646.2008.00549.x DO - 10.1111/j.1558-5646.2008.00549.x ID - Edwards2009 ER - TY - BOOK AU - Zhang, C. AU - Sayyari, E. AU - Mirarab, S. PY - 2017 DA - 2017// TI - ASTRAL-III: increased scalability and impacts of contracting low support branches. RECOMB International Workshop on Comparative Genomics ID - Zhang2017 ER - TY - JOUR AU - Mirarab, S. AU - Warnow, T. PY - 2015 DA - 2015// TI - ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes JO - Bioinformatics VL - 31 UR - https://doi.org/10.1093/bioinformatics/btv234 DO - 10.1093/bioinformatics/btv234 ID - Mirarab2015 ER - TY - JOUR AU - Sayyari, E. AU - Mirarab, S. PY - 2016 DA - 2016// TI - Anchoring quartet-based phylogenetic distances and applications to species tree reconstruction JO - BMC Genomics VL - 17 UR - https://doi.org/10.1186/s12864-016-3098-z DO - 10.1186/s12864-016-3098-z ID - Sayyari2016 ER - TY - BOOK AU - Aberer, A. J. AU - Stamatakis, A. PY - 2011 DA - 2011// TI - A simple and accurate method for rogue taxon identification. IEEE International Conference on Bioinformatics and Biomedicine BIBM ID - Aberer2011 ER - TY - JOUR AU - Aberer, A. J. AU - Krompass, D. AU - Stamatakis, A. PY - 2012 DA - 2012// TI - Pruning rogue taxa improves phylogenetic accuracy: an efficient algorithm and webservice JO - Syst Biol VL - 62 UR - https://doi.org/10.1093/sysbio/sys078 DO - 10.1093/sysbio/sys078 ID - Aberer2012 ER - TY - JOUR AU - Vienne, D. M. AU - Ollier, S. AU - Aguileta, G. PY - 2012 DA - 2012// TI - Phylo-MCOA: a fast and efficient method to detect outlier genes and species in phylogenomics using multiple co-inertia analysis JO - Mol Biol Evol VL - 29 UR - https://doi.org/10.1093/molbev/msr317 DO - 10.1093/molbev/msr317 ID - Vienne2012 ER - TY - JOUR AU - Dial, K. P. AU - Marzluff, J. M. PY - 1989 DA - 1989// TI - Nonrandom diversification within taxonomic assemblages JO - Syst Zool VL - 38 UR - https://doi.org/10.2307/2992433 DO - 10.2307/2992433 ID - Dial1989 ER - TY - JOUR AU - Doyle, J. A. AU - Donoghue, M. J. PY - 1993 DA - 1993// TI - Phylogenies and angiosperm diversification JO - Paleobiology VL - 19 UR - https://doi.org/10.1017/S0094837300015840 DO - 10.1017/S0094837300015840 ID - Doyle1993 ER - TY - JOUR AU - Sanderson, M. J. AU - Donoghue, M. J. PY - 1994 DA - 1994// TI - Shifts in diversification rate with the origin of angiosperms JO - Science VL - 264 UR - https://doi.org/10.1126/science.264.5165.1590 DO - 10.1126/science.264.5165.1590 ID - Sanderson1994 ER - TY - JOUR AU - Sanderson, M. J. AU - Donoghue, M. J. PY - 1996 DA - 1996// TI - Reconstructing shifts in diversification rates on phylogenetic trees JO - Trends Ecol Evol VL - 11 UR - https://doi.org/10.1016/0169-5347(96)81059-7 DO - 10.1016/0169-5347(96)81059-7 ID - Sanderson1996 ER - TY - JOUR AU - Rabosky, D. L. PY - 2014 DA - 2014// TI - Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees. Kolokotronis S-O JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0089543 DO - 10.1371/journal.pone.0089543 ID - Rabosky2014 ER - TY - JOUR AU - Rabosky, D. L. AU - Grundler, M. AU - Anderson, C. AU - Title, P. AU - Shi, J. J. AU - Brown, J. W. PY - 2014 DA - 2014// TI - BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees JO - Methods Ecol Evol VL - 5 UR - https://doi.org/10.1111/2041-210X.12199 DO - 10.1111/2041-210X.12199 ID - Rabosky2014 ER - TY - JOUR AU - SOHN, J. A. E. -. C. H. E. O. N. AU - LABANDEIRA, C. O. N. R. A. D. AU - DAVIS, D. O. N. A. L. D. AU - MITTER, C. H. A. R. L. E. S. PY - 2012 DA - 2012// TI - An annotated catalog of fossil and subfossil Lepidoptera (Insecta: Holometabola) of the world JO - Zootaxa VL - 3286 UR - https://doi.org/10.11646/zootaxa.3286.1.1 DO - 10.11646/zootaxa.3286.1.1 ID - SOHN2012 ER - TY - JOUR AU - Jong, R. PY - 2017 DA - 2017// TI - Fossil butterflies, calibration points and the molecular clock (Lepidoptera: Papilionoidea) JO - Zootaxa VL - 4270 UR - https://doi.org/10.11646/zootaxa.4270.1.1 DO - 10.11646/zootaxa.4270.1.1 ID - Jong2017 ER - TY - JOUR AU - Plummer, M. AU - Best, N. AU - Cowles, K. AU - Vines, K. PY - 2006 DA - 2006// TI - CODA: convergence diagnosis and output analysis for MCMC JO - R News VL - 6 ID - Plummer2006 ER - TY - STD TI - Schaus W. Familie Bombycidae (Epiinae). In: A. Seitz, Kernen. editor. Die Gross-Schmetterlinge der Erde; 1929. p. 675–711. ID - ref82 ER - TY - JOUR AU - Kawahara, A. Y. AU - Mignault, A. A. AU - Regier, J. C. AU - Kitching, I. J. AU - Phylogeny, M. C. PY - 2009 DA - 2009// TI - Biogeography of hawkmoths (Lepidoptera: Sphingidae): evidence from five nuclear genes JO - PLoS ONE VL - 4 UR - https://doi.org/10.1371/journal.pone.0005719 DO - 10.1371/journal.pone.0005719 ID - Kawahara2009 ER - TY - JOUR AU - Nässig, W. A. AU - Oberprieler, R. G. PY - 2008 DA - 2008// TI - An annotated catalogue of the genera of Eupterotidae (Insecta, Lepidoptera, Bombycoidea) JO - Senckenberg Biol VL - 88 ID - Nässig2008 ER - TY - JOUR AU - Scornavacca, C. AU - Galtier, N. PY - 2017 DA - 2017// TI - Incomplete Lineage Sorting in Mammalian Phylogenomics JO - Syst Biol VL - 5 ID - Scornavacca2017 ER - TY - JOUR AU - Dornburg, A. AU - Su, Z. AU - Townsend, J. P. PY - 2019 DA - 2019// TI - Optimal rates for phylogenetic inference and experimental Design in the era of genome-scale data sets JO - Syst Biol VL - 68 UR - https://doi.org/10.1093/sysbio/syy047 DO - 10.1093/sysbio/syy047 ID - Dornburg2019 ER - TY - JOUR AU - Misof, B. AU - Liu, S. AU - Meusemann, K. AU - Peters, R. S. AU - Donath, A. PY - 2014 DA - 2014// TI - Phylogenomics resolves the timing and pattern of insect evolution JO - Science VL - 346 UR - https://doi.org/10.1126/science.1257570 DO - 10.1126/science.1257570 ID - Misof2014 ER - TY - JOUR AU - Wahlberg, N. AU - Wheat, C. W. AU - Peña, C. PY - 2013 DA - 2013// TI - Timing and patterns in the taxonomic diversification of Lepidoptera (butterflies and moths) JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0080875 DO - 10.1371/journal.pone.0080875 ID - Wahlberg2013 ER -