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Table 2 Positively selected genes of the entire clade of birds based on the clade model C

From: Widespread nocturnality of living birds stemming from their common ancestor

Genes Parameter estimates 2∆L df P-value
CNGA1 p0 = 0.903 p1 = 0.086 p2 = 0.010 17.88 1 2.350E-05
ω0 = 0.041 ω1 = 1.000 ω2 = 2.231
CNGB3 p0 = 0.808 p1 = 0.187 p2 = 0.004 9.80 1 0.001
ω0 = 0.052 ω1 = 1.000 ω2 = 5.094
PDE6B p0 = 0.933 p1 = 0.063 p2 = 0.002 4.56 1 0.032
ω0 = 0.036 ω1 = 1.000 ω2 = 2.620
PDE6C p0 = 0.851 p1 = 0.136 p2 = 0.011 38.37 1 5.845E-10
ω0 = 0.048 ω1 = 1.000 ω2 = 3.145
SAG p0 = 0.806 p1 = 0.177 p2 = 0.015 24.06 1 9.336E-07
ω0 = 0.077 ω1 = 1.000 ω2 = 2.621
SLC24A1 p0 = 0.737 p1 = 0.249 p2 = 0.013 19.75 1 8.816E-06
ω0 = 0.050 ω1 = 1.000 ω2 = 4.065
SLC24A2 p0 = 0.782 p1 = 0.193 p2 = 0.024 13.68 1 0.000
ω0 = 0.051 ω1 = 1.000 ω2 = 2.917
  1. 2∆L: twice the difference of likelihood values between two nested models; df: degrees of freedom; p: proportion of sites in different site classes (p0, p1 and p2)