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Table 4 Pairs of coevolving residues detected by CAPS (Coevolution Analysis using Protein Sequences) in 116 rbcL sequences of the Ilex Worldwide dataset. Parameters used in CAPS are: alpha threshold 0.001, number of simulated alignments 1000, bootstrap value 0.95, await convergence and time correction on

From: Exceptionally high rates of positive selection on the rbcL gene in the genus Ilex (Aquifoliaceae)

Codon 1 Codon 2 Correlation Bootstrap Distance in Å
D 19 G 196 0.51 0.99 68.6
D 30 G 196 0.50 0.99 57.2
A 91 N 95 0.99 0.97 8.2
Y 97 M 309 0.70 1.00 12.8
F 117 T 279 0.67 0.98 13.2
C 221 M 251 0.51 1.00 20.9
M 309 A 328 0.70 1.00 19.7
A 317 M 320 0.62 0.98 6.7
A 328 D 340 0.78 1.00 16.9
A 328 V 354 0.70 1.00 23.9
D 340 V 354 0.70 1.00 21.0
F 353 V 354 0.73 1.00 5.5