Table 4 Pairs of coevolving residues detected by CAPS (Coevolution Analysis using Protein Sequences) in 116 rbcL sequences of the Ilex Worldwide dataset. Parameters used in CAPS are: alpha threshold 0.001, number of simulated alignments 1000, bootstrap value 0.95, await convergence and time correction on
From: Exceptionally high rates of positive selection on the rbcL gene in the genus Ilex (Aquifoliaceae)
Codon 1 | Codon 2 | Correlation | Bootstrap | Distance in Å |
|---|---|---|---|---|
D 19 | G 196 | 0.51 | 0.99 | 68.6 |
D 30 | G 196 | 0.50 | 0.99 | 57.2 |
A 91 | N 95 | 0.99 | 0.97 | 8.2 |
Y 97 | M 309 | 0.70 | 1.00 | 12.8 |
F 117 | T 279 | 0.67 | 0.98 | 13.2 |
C 221 | M 251 | 0.51 | 1.00 | 20.9 |
M 309 | A 328 | 0.70 | 1.00 | 19.7 |
A 317 | M 320 | 0.62 | 0.98 | 6.7 |
A 328 | D 340 | 0.78 | 1.00 | 16.9 |
A 328 | V 354 | 0.70 | 1.00 | 23.9 |
D 340 | V 354 | 0.70 | 1.00 | 21.0 |
F 353 | V 354 | 0.73 | 1.00 | 5.5 |