Table 5 Comparison of positive selection in rbcL of different lineages detected by PAML (M8 model) and by SLR (probability ≥0.95)
From: Exceptionally high rates of positive selection on the rbcL gene in the genus Ilex (Aquifoliaceae)
Lineages | N. seqa | dN/dSb | %pc | PALMd | SLRd |
|---|---|---|---|---|---|
Ilex, the 20-species alignment | 20 | 20.5 | 8.2 | 26 | 7 |
eurosids I-26 (Fagaceae)e | 21 | 62.0 (61.0) | 0.4 (0.4) | 2 (2) | 1 |
euasterids I-9 (Lamiaceae)e | 19 | 27.9 (26.7) | 6.3 (6.0) | 3 (2) | 0 |
Coniferales 6 (Pinus)e | 35 | 13.1 (24.8) | 1.6 (1.1) | 6 (6) | 2 |
commelinids-7 (Cyperaceae)e | 27 | 1.1 (1.2) | 12.7 (12.9) | 0 (0) | 0 |
Commelinids-15 (Poaceae)e | 28 | 2.4 (2.4) | 10.0 (9.9) | 15 (15) | 0 |
eurosids I-24 (Fagales)e | 20 | 1.7 (1.6) | 7.4 (8.5) | 0 (0) | 0 |
euasterids I-8 (Lamiaceae)e | 20 | 2.7 (2.8) | 10.7 (10.3) | 2 (2) | 0 |
Gnetales-1 (Gnetum)e | 23 | 3.7 (3.5) | 8.5 (8.6) | 3 (3) | 0 |
Flaveria | 16 | 19.2 | 1.8 | 5 | 1 |
Nothofagus | 24 | 6.2 | 5.4 | 7 | 1 |
Populus | 14 | 5.1 | 3.9 | 6 | 0 |
Potamogeton | 18 | 11.6 | 1.2 | 1 | 1 |
Quercus | 30 | 18.4 | 0.6 | 2 | 1 |
Salix | 28 | 2.5 | 9.7 | 1 | 0 |
Schiedea | 27 | 26.1 | 0.6 | 0 | 0 |