Fig. 1
From: PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees
The workflow of PhySpeTree. PhySpeTree retrieves and downloads corresponding sequences following with multiple sequence alignments, conserved blocks selection, and tree reconstruction. PhySpeTree also allows users to insert their own sequences of HCP or SSU rRNA. Output trees are in the “newick” format files. ①Automatic tree reconstruction ②Processing user-defined fasta files for unannotated organisms ③Reconstructing species trees with unannotated organisms